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AT1G51460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 379847 Blast hits to 348933 proteins in 4101 species: Archae - 6887; Bacteria - 304547; Metazoa - 7636; Fungi - 6582; Plants - 5428; Viruses - 18; Other Eukaryotes - 48749 (source: NCBI BLink).
Protein Annotations
BioGrid:26796eggNOG:COG1131eggNOG:KOG0061EMBL:AC024261EMBL:AK118438EMBL:CP002684EnsemblPlants:AT1G51460
EnsemblPlants:AT1G51460.1entrez:841571Gene3D:3.40.50.300GeneID:841571Genevisible:Q9C8J8GO:GO:0005524GO:GO:0005886
GO:GO:0009506GO:GO:0009651GO:GO:0016021GO:GO:0042626GO:GO:0055085GO:GO:0080051GO:GO:0080172
Gramene:AT1G51460.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF247HOGENOM:HOG000166547InParanoid:Q9C8J8InterPro:IPR003439InterPro:IPR003593
InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT1G51460OMA:VFWRYPVPaxDb:Q9C8J8Pfam:PF00005
Pfam:PF01061Pfam:Q9C8J8Pfscan:PS50893PhylomeDB:Q9C8J8PIR:H96552PRIDE:Q9C8J8PRO:PR:Q9C8J8
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9C8J8Proteomes:UP000006548Reactome:R-ATH-1369062Reactome:R-ATH-265473RefSeq:NP_175557.1
scanprosite:PS00211SMART:SM00382SMR:Q9C8J8STRING:3702.AT1G51460.1SUPFAM:SSF52540TAIR:AT1G51460TMHMM:TMhelix
UniGene:At.37812UniProt:Q9C8J8
Coordinates (TAIR10) chr1:-:19077132..19081335
Molecular Weight (calculated) 75224.80 Da
IEP (calculated) 8.68
GRAVY (calculated) 0.17
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTPEGAMYV AWEDLTVVIP NFGEGATKRL LNGVNGCGEP NRILAIMGPS GSGKSTLLDA LAGRLAGNVV MSGKVLVNGK KRRLDFGAAA YVTQEDVLLG
101: TLTVRESISY SAHLRLPSKL TREEISDIVE ATITDMGLEE CSDRTIGNWH LRGISGGEKK RLSIALEVLT KPSLLFLDEP TSGLDSASAF FVVQILRNIA
201: SSGKTVVSSI HQPSGEVFAL FDDLLLLSGG ETVYFGEAES ATKFFGEAGF PCPSRRNPSD HFLRCVNSDF DNVTAALVES RRINDSSFSL HQLHETTNTL
301: DPLDDIPTAE IRTTLVRKFK CSLYAAASRA RIQEIASIVG IVTERKKGSQ TNWWKQLRIL TQRSFINMSR DLGYYWMRIA VYIVLSICVG SIFFNVGRNH
401: TNVMSTAACG GFMAGFMTFM SIGGFQSFIE EMKVFSRERL NGHYGVAVYT VSNLLSSLPF IILMCLSTSS ITIYMVRFQS GGSHFFYNCL DLICAITTVE
501: SCMMMIASVV PNFLMGVMLG AGYIGIMVLS AGFFRFFPDL PMVFWRYPVS YINYGAWALQ GAYKNEMIGV EYDSPLPLVP KMKGELILQT VLGINPESSK
601: WLDLAVVMMI LIGYRIAFFA ILKFREKVFP VIHMLYTKRT LSHIQKRPSF RRMTPFPSRR YPVHHALSSQ EGLNSPLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)