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AT1G72900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.551
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AC008017EMBL:AY136432EMBL:BT000215EMBL:CP002684
EnsemblPlants:AT1G72900EnsemblPlants:AT1G72900.1entrez:843621Gene3D:3.40.50.10140
GeneID:843621GO:GO:0007165GO:GO:0043531Gramene:AT1G72900.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF169HOGENOM:HOG000064702IntAct:Q9SSN6
InterPro:IPR000157InterPro:IPR002182InterPro:IPR027417KEGG:ath:AT1G72900
OMA:AHISECKPfam:PF00931Pfam:PF01582Pfscan:PS50104
PhylomeDB:Q9SSN6PIR:B96754PROSITE:PS50104Proteomes:UP000006548
RefSeq:NP_177433.1SMART:SM00255SMR:Q9SSN6STRING:3702.AT1G72900.1
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT1G72900UniGene:At.71105
UniProt:Q9SSN6
Coordinates (TAIR10) chr1:+:27432216..27433532
Molecular Weight (calculated) 41211.60 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.24
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSATATYNY DVFLSFRGPD TRRKFISFLY KELVGRDIRT FKDDKELENG QMISPELILA IEDSRFAVVV VSVNYAASSW CLDELVKIMD IQKNKGSITV
101: MPIFYGVNPC HLRRQIGDVA EQFKKHEARE KDLEKVLKWR QALAALADIS GDCSGEDDSK LVDVIADKIS KELMIVTRIS NGRNLVGIDK HMNELNRLMD
201: LNSNKGKRMV GIWARGGSCR SALAKYVYQT SCQHFDSHCF LGNVKRICQG NYFESHLHKE FLDNIQGENS SKQSLKKQKV LLVADDVDKL EQLDALAGDF
301: SGFGPGSVVI ITTKDKQLLI SYGIQLVYEA EFLTFQKFCR SFRSLAFKKR DDISAAFEWA LYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)