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AT2G04040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.
Computational
Description (TAIR10)
TX1; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 9657 Blast hits to 9581 proteins in 1940 species: Archae - 182; Bacteria - 6693; Metazoa - 146; Fungi - 326; Plants - 1322; Viruses - 0; Other Eukaryotes - 988 (source: NCBI BLink).
Protein Annotations
BioGrid:339eggNOG:COG0534eggNOG:ENOG410JWE4EMBL:AC007178
EMBL:AK227153EMBL:BT022022EMBL:BT026371EMBL:CP002685
EnsemblPlants:AT2G04040EnsemblPlants:AT2G04040.1entrez:814938GeneID:814938
Genevisible:Q9SIA5GO:GO:0005886GO:GO:0015238GO:GO:0015297
GO:GO:0015691GO:GO:0016021GO:GO:0051238Gramene:AT2G04040.1
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF87HOGENOM:HOG000177026InParanoid:Q9SIA5
InterPro:IPR002528KEGG:ath:AT2G04040KO:K03327ncoils:Coil
OMA:WIVESAFPaxDb:Q9SIA5Pfam:PF01554Pfam:Q9SIA5
PhylomeDB:Q9SIA5PIR:A84454PRIDE:Q9SIA5PRO:PR:Q9SIA5
ProteinModelPortal:Q9SIA5Proteomes:UP000006548RefSeq:NP_178491.1SMR:Q9SIA5
STRING:3702.AT2G04040.1TAIR:AT2G04040tair10-symbols:ATDTX1tair10-symbols:TX1
TCDB:2.A.66.1.8TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.26662UniGene:At.41354UniProt:Q9SIA5
Coordinates (TAIR10) chr2:-:1334614..1336480
Molecular Weight (calculated) 51847.80 Da
IEP (calculated) 7.74
GRAVY (calculated) 0.70
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEPFLLRDE LLVPSQVTWH TNPLTVELKR VSRLAAPMAT VTIAQYLLPV ISVMVAGHNG ELQLSGVALA NSFTNVTGFS IMCGLVGALE TLCGQAYGAK
101: QYEKIGTYAY SAIASNIPIC FLISILWLYI EKILISLGQD PEISRIAGSY AFWLIPALFG QAIVIPLSRF LLTQGLVIPL LFTAVTTLLF HVLVCWTLVF
201: LFGLGCNGPA MATSVSFWFY AVILSCYVRF SSSCEKTRGF VSRDFVSSIK QFFQYGIPSA AMICLEWWLF EILILCSGLL PNPKLETSVL SICLTIETLH
301: YVISAGVAAA VSTRVSNNLG AGNPQVARVS VLAGLCLWIV ESAFFSILLF TCRNIIGYAF SNSKEVLDYV ADLTPLLCLS FILDGFTAVL NGVARGSGWQ
401: HIGAWNNTVS YYLVGAPVGI YLAFSRELNG KGLWCGVVVG STVQATILAI VTASINWKEQ AEKARKRIVS TENRLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)