AT2G04070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.553 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: transport, drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1353947..1355790 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51491.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.71 | ||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEPFLPQDE QIVPCKATWK SGQLNVELKK VSRLAVPMAT VTIAQYLLPV ISVMVAGHNG ELQLSGVALA TSFTNVSGFS IMFGLVGSLE TLSGQAYGAK 101: QYEKMGTYTY SAISSNIPIC VLISILWIYM EKLLISLGQD PDISRVAGSY ALRLIPTLFA HAIVLPLTRF LLAQGLVLPL LYFALTTLLF HIAVCWTLVS 201: ALGLGSNGAA LAISVSFWFF AMTLSCYVRF SSSCEKTRRF VSQDFLSSVK QFFRYGVPSA AMLCLEWWLF ELLILCSGLL QNPKLETSVL SICLTTATLH 301: YVIPVGVAAA VSTRVSNKLG AGIPQVARVS VLAGLCLWLV ESSFFSILLF AFRNIIGYAF SNSKEVVDYV ADLSPLLCLS FVLDGFTAVL NGVARGCGWQ 401: HIGALNNVVA YYLVGAPVGI YLAFSCELNG KGLWCGVVVG SAVQAIILAI VTASMNWKEQ AKKARKRLIS SENGLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)