AT2G04050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: stem, leaf whorl, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04070.1); Has 9243 Blast hits to 9147 proteins in 1877 species: Archae - 201; Bacteria - 6287; Metazoa - 147; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1337386..1339270 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51471.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.73 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEPFLLQDE HLVPCKDTWK SGQVTVELKK VSSLAAPMAA VTIAQYLLPV ISVMVAGHNG ELQLSGVALA TSFTNVSGFS ILFGLAGALE TLCGQAYGAK 101: QYEKIGTYTY SATASNIPIC VLISVLWIYI EKLLISLGQD PDISRVAGSY ALWLIPALFA HAFFIPLTRF LLAQGLVLPL LYCTLTTLLF HIPVCWAFVY 201: AFGLGSNGAA MAISVSFWFY VVILSCYVRY SSSCDKTRVF VSSDFVSCIK QFFHFGVPSA AMVCLEWWLF ELLILCSGLL PNPKLETSVL SICLTTASLH 301: YVIPGGVAAA VSTRVSNKLG AGIPQVARVS VLAGLCLWLV ESAFFSTLLF TCRNIIGYAF SNSKEVVDYV ANLTPLLCLS FILDGFTAVL NGVARGSGWQ 401: HIGALNNVVA YYLVGAPVGV YLAFNRELNG KGLWCGVVVG SAVQAIILAF VTASINWKEQ AEKARKRMVS SENRLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)