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AT3G59540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal L38e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT2G43460.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioGrid:4283eggNOG:ENOG4112229eggNOG:KOG3499EMBL:AC002335
EMBL:AF361841EMBL:AL138659EMBL:AY088307EMBL:BT000853
EMBL:BT025016EMBL:CP002685EMBL:CP002686EnsemblPlants:AT2G43460.1
EnsemblPlants:AT3G59540EnsemblPlants:AT3G59540.1entrez:818947entrez:825123
GeneID:818947GeneID:825123Genevisible:O22860GO:GO:0003735
GO:GO:0006412GO:GO:0022625GO:GO:0022626Gramene:AT2G43460.1
Gramene:AT3G59540.1hmmpanther:PTHR10965hmmpanther:PTHR10965:SF3HOGENOM:HOG000188979
InParanoid:O22860IntAct:O22860InterPro:IPR002675KEGG:ath:AT2G43460
KEGG:ath:AT3G59540KO:K02923OMA:QYTLVVNPANTHER:PTHR10965
PaxDb:O22860Pfam:O22860Pfam:PF01781PhylomeDB:O22860
PIR:D84866PIR:T49295PRIDE:O22860PRO:PR:O22860
ProDom:PD010361ProteinModelPortal:O22860Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_181874.1RefSeq:NP_191513.1SMR:O22860
STRING:3702.AT3G59540.1TAIR:AT2G43460TAIR:AT3G59540UniGene:At.12192
UniGene:At.28719UniGene:At.67039UniProt:O22860
Coordinates (TAIR10) chr3:-:21995897..21996742
Molecular Weight (calculated) 8122.10 Da
IEP (calculated) 10.62
GRAVY (calculated) -0.55
Length 69 amino acids
Sequence (TAIR10)
(BLAST)
1: MPKQIHEIKD FLLTARRKDA RSVKIKRSKD IVKFKVRCSR YLYTLCVFDQ EKADKLKQSL PPGLSVQDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)