AT1G24400.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.875 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : lysine histidine transporter 2 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
lysine histidine transporter 2 (LHT2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G67640.1); Has 4292 Blast hits to 4283 proteins in 340 species: Archae - 11; Bacteria - 170; Metazoa - 1210; Fungi - 747; Plants - 1636; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:8651563..8653561 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49155.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.62 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGNSEMSASE VAAAKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG WGPGVTIMVM SWIITLYTLW QMVEMHEIVP GKRLDRYHEL 101: GQHAFGEKLG LWIVVPQQLI VEVGVDIVYM VTGGASLKKV HQLVCPDCKE IRTTFWIMIF ASVHFVISHL PNFNSISIIS LAAAVMSLTY STIAWAASVH 201: KGVHPDVDYS PRASTDVGKV FNFLNALGDV AFAYAGHNVV LEIQATIPST PEMPSKVPMW RGVIVAYIVV AICYFPVAFL GYYIFGNSVD DNILITLEKP 301: IWLIAMANMF VVIHVIGSYQ IFAMPVFDML ETVLVKKMNF NPSFKLRFIT RSLYVAFTMI VAICVPFFGG LLGFFGGFAF APTTYYLPCI MWLVLKKPKR 401: FGLSWTANWF CIIVGVLLTI LAPIGGLRTI IINAKTYKFF S |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)