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AT3G04730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indoleacetic acid-induced protein 16
Curator
Summary (TAIR10)
early auxin-induced (IAA16)
Computational
Description (TAIR10)
indoleacetic acid-induced protein 16 (IAA16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid 7 (TAIR:AT3G23050.1); Has 1752 Blast hits to 1751 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1751; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:4968DNASU:819633eggNOG:ENOG410IK8ZeggNOG:ENOG410YEC3EMBL:AC011437EMBL:AF332400EMBL:AF375420
EMBL:AY087195EMBL:BT000857EMBL:CP002686EMBL:U49072EnsemblPlants:AT3G04730EnsemblPlants:AT3G04730.1entrez:819633
ExpressionAtlas:O24407GeneID:819633Genevisible:O24407GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733
GO:GO:0009734Gramene:AT3G04730.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF28HOGENOM:HOG000238261InParanoid:O24407IntAct:O24407
InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389iPTMnet:O24407KEGG:ath:AT3G04730KO:K14484ncoils:Coil
OMA:MDSVSKVPANTHER:PTHR31734PaxDb:O24407Pfam:O24407Pfam:PF02309Pfscan:PS51745PhylomeDB:O24407
PRIDE:O24407PRO:PR:O24407PROSITE:PS51745ProteinModelPortal:O24407Proteomes:UP000006548RefSeq:NP_187124.1SMR:O24407
STRING:3702.AT3G04730.1SUPFAM:SSF54277TAIR:AT3G04730tair10-symbols:IAA16UniGene:At.24121UniProt:O24407UniProt:Q0WNJ2
Coordinates (TAIR10) chr3:-:1288993..1290415
Molecular Weight (calculated) 25660.70 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.47
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)