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AT3G23560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds.
Computational
Description (TAIR10)
ABERRANT LATERAL ROOT FORMATION 5 (ALF5); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to toxin; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G23550.1); Has 11709 Blast hits to 11651 proteins in 2060 species: Archae - 284; Bacteria - 8224; Metazoa - 146; Fungi - 324; Plants - 1351; Viruses - 0; Other Eukaryotes - 1380 (source: NCBI BLink).
Protein Annotations
BioGrid:7267eggNOG:COG0534eggNOG:KOG1347EMBL:AB023036
EMBL:AF337954EMBL:AY062511EMBL:CP002686EnsemblPlants:AT3G23560
EnsemblPlants:AT3G23560.1entrez:821935GeneID:821935Genevisible:Q9LUH2
GO:GO:0006855GO:GO:0009636GO:GO:0015238GO:GO:0015297
GO:GO:0016021Gramene:AT3G23560.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF78
HOGENOM:HOG000177026InParanoid:Q9LUH2InterPro:IPR002528KEGG:ath:AT3G23560
KO:K03327OMA:FRYIVINPaxDb:Q9LUH2Pfam:PF01554
Pfam:Q9LUH2PhylomeDB:Q9LUH2PRIDE:Q9LUH2PRO:PR:Q9LUH2
ProteinModelPortal:Q9LUH2Proteomes:UP000006548RefSeq:NP_566730.1SMR:Q9LUH2
STRING:3702.AT3G23560.1TAIR:AT3G23560tair10-symbols:ALF5TCDB:2.A.66.1.6
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.20371
UniProt:Q9LUH2
Coordinates (TAIR10) chr3:-:8454361..8456588
Molecular Weight (calculated) 51855.20 Da
IEP (calculated) 8.32
GRAVY (calculated) 0.74
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPATSSPL LDDHVGGEDE RGRRSRSSTL VQKVIDVEEA KAQMIYSLPM ILTNVFYYCI PITSVMFASH LGQLELAGAT LANSWATVSG FAFMVGLSGS
101: LETLCGQGFG AKRYRMLGVH LQSSCIVSLV FSILITIFWF FTESIFGLLR QDPSISKQAA LYMKYQAPGL LAYGFLQNIL RFCQTQSIIA PLVIFSFVPL
201: VINIATAYVL VYVAGLGFIG APIATSISLW IAFLSLGTYV MCSEKFKETW TGFSLESFRY IVINLTLSLP SAAMVCLEYW AFEILVFLAG VMPNPEINTS
301: LVAICVNTEA ISYMLTYGLS AAASTRVSNE LGAGNVKGAK KATSVSVKLS LVLALGVVIV LLVGHDGWVG LFSDSYVIKE EFASLRFFLA ASITLDSIQG
401: VLSGVARGCG WQRLVTVINL ATFYLIGMPI AAFCGFKLKF YAKGLWIGLI CGIFCQSSSL LLMTIFRKWT KLNVATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)