suba logo
AT5G27600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : long-chain acyl-CoA synthetase 7
Curator
Summary (TAIR10)
Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.
Computational
Description (TAIR10)
long-chain acyl-CoA synthetase 7 (LACS7); FUNCTIONS IN: protein binding, long-chain fatty acid-CoA ligase activity; INVOLVED IN: response to salt stress, long-chain fatty acid metabolic process, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 6 (TAIR:AT3G05970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G27600-MONOMERBioCyc:MetaCyc:AT5G27600-MONOMERBioGrid:18094EC:6.2.1.3
eggNOG:COG1022eggNOG:KOG1256EMBL:AC007478EMBL:AF503757
EMBL:AK118614EMBL:CP002688EnsemblPlants:AT5G27600EnsemblPlants:AT5G27600.1
entrez:832820GeneID:832820Genevisible:Q8LKS5GO:GO:0001676
GO:GO:0004467GO:GO:0005524GO:GO:0005777GO:GO:0006631
GO:GO:0009651GO:GO:0010193Gramene:AT5G27600.1gramene_pathway:6.2.1.3
gramene_pathway:PWY-5136gramene_pathway:PWY-5143gramene_pathway:PWY-5995hmmpanther:PTHR24096
hmmpanther:PTHR24096:SF221HOGENOM:HOG000159459InParanoid:Q8LKS5IntAct:Q8LKS5
InterPro:IPR000873InterPro:IPR020845KEGG:ath:AT5G27600KO:K01897
OMA:ISAMNIGPaxDb:Q8LKS5Pfam:PF00501Pfam:Q8LKS5
PhylomeDB:Q8LKS5PRIDE:Q8LKS5PRO:PR:Q8LKS5PROSITE:PS00455
ProteinModelPortal:Q8LKS5Proteomes:UP000006548Reactome:R-ATH-2046105Reactome:R-ATH-2046106
Reactome:R-ATH-75876RefSeq:NP_198112.2scanprosite:PS00455SMR:Q8LKS5
STRING:3702.AT5G27600.1SUPFAM:SSF56801TAIR:AT5G27600tair10-symbols:ATLACS7
tair10-symbols:LACS7UniGene:At.20193UniPathway:UPA00199UniProt:Q8LKS5
Coordinates (TAIR10) chr5:+:9742616..9746795
Molecular Weight (calculated) 77357.40 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.14
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFASPEQRR LETIRSHIDT SPTNDQSSSL FLNATASSAS PFFKEDSYSV VLPEKLDTGK WNVYRSKRSP TKLVSRFPDH PEIGTLHDNF VHAVETYAEN
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)