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AT3G59030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20180920 (2010): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.
Computational
Description (TAIR10)
TRANSPARENT TESTA 12 (TT12); CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G21690.1); Has 8592 Blast hits to 8553 proteins in 1935 species: Archae - 188; Bacteria - 5730; Metazoa - 144; Fungi - 324; Plants - 1347; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).
Protein Annotations
BioGrid:10387eggNOG:COG0534eggNOG:KOG1347EMBL:AJ294464
EMBL:AL163527EMBL:AY088768EMBL:CP002686EnsemblPlants:AT3G59030
EnsemblPlants:AT3G59030.1entrez:825072GeneID:825072Genevisible:Q9LYT3
GO:GO:0006855GO:GO:0009705GO:GO:0009813GO:GO:0010023
GO:GO:0010231GO:GO:0015238GO:GO:0015299GO:GO:0016021
GO:GO:0022857GO:GO:1902600Gramene:AT3G59030.1hmmpanther:PTHR11206
hmmpanther:PTHR11206:SF85HOGENOM:HOG000177025InParanoid:Q9LYT3InterPro:IPR002528
KEGG:ath:AT3G59030KO:K03327OMA:LYWYSGPPaxDb:Q9LYT3
Pfam:PF01554Pfam:Q9LYT3PhylomeDB:Q9LYT3PIR:T47785
PRIDE:Q9LYT3PRO:PR:Q9LYT3ProteinModelPortal:Q9LYT3Proteomes:UP000006548
RefSeq:NP_191462.1SMR:Q9LYT3STRING:3702.AT3G59030.1TAIR:AT3G59030
tair10-symbols:ATTT12tair10-symbols:TT12TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.46184UniGene:At.48783UniPathway:UPA00154
UniProt:Q9LYT3
Coordinates (TAIR10) chr3:+:21819124..21821288
Molecular Weight (calculated) 55150.40 Da
IEP (calculated) 8.18
GRAVY (calculated) 0.74
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTETYEPL LTRLHSDSQI TERSSPEIEE FLRRRGSTVT PRWWLKLAVW ESKLLWTLSG ASIVVSVLNY MLSFVTVMFT GHLGSLQLAG ASIATVGIQG
101: LAYGIMLGMA SAVQTVCGQA YGARQYSSMG IICQRAMVLH LAAAVFLTFL YWYSGPILKT MGQSVAIAHE GQIFARGMIP QIYAFALACP MQRFLQAQNI
201: VNPLAYMSLG VFLLHTLLTW LVTNVLDFGL LGAALILSFS WWLLVAVNGM YILMSPNCKE TWTGFSTRAF RGIWPYFKLT VASAVMLCLE IWYNQGLVII
301: SGLLSNPTIS LDAISICMYY LNWDMQFMLG LSAAISVRVS NELGAGNPRV AMLSVVVVNI TTVLISSVLC VIVLVFRVGL SKAFTSDAEV IAAVSDLFPL
401: LAVSIFLNGI QPILSGVAIG SGWQAVVAYV NLVTYYVIGL PIGCVLGFKT SLGVAGIWWG MIAGVILQTL TLIVLTLKTN WTSEVENAAQ RVKTSATENQ
501: EMANAGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)