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AT2G38330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G38380.1); Has 17219 Blast hits to 17166 proteins in 2310 species: Archae - 394; Bacteria - 13798; Metazoa - 83; Fungi - 156; Plants - 607; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
Protein Annotations
BioGrid:3755eggNOG:COG0534eggNOG:KOG1347EMBL:AC004683
EMBL:BT004001EMBL:BT005521EMBL:CP002685EnsemblPlants:AT2G38330
EnsemblPlants:AT2G38330.1entrez:818413GeneID:818413Genevisible:Q84K71
GO:GO:0015238GO:GO:0015297GO:GO:0016021GO:GO:0031969
Gramene:AT2G38330.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF101HOGENOM:HOG000253153
InParanoid:Q84K71IntAct:Q84K71InterPro:IPR002528KEGG:ath:AT2G38330
OMA:HSHRIATPaxDb:Q84K71Pfam:PF01554Pfam:Q84K71
PhylomeDB:Q84K71PIR:T02512PRIDE:Q84K71PRO:PR:Q84K71
ProteinModelPortal:Q84K71Proteomes:UP000006548RefSeq:NP_181367.2SMR:Q84K71
STRING:3702.AT2G38330.1TAIR:AT2G38330TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.37311UniGene:At.74107UniProt:Q84K71
Coordinates (TAIR10) chr2:+:16064571..16067318
Molecular Weight (calculated) 54913.00 Da
IEP (calculated) 6.37
GRAVY (calculated) 0.54
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVATSFCF SPHRSPSRFG NPNSSIRRTI VCKSSPRDES PAVSTSSQRP EKQQNPLTSQ NKPDHDHKPD PGIGKIGMEI MSIALPAALA LAADPITSLV
101: DTAFVGHIGS AELAAVGVSV SVFNLVSKLF NVPLLNVTTS FVAEEQAIAA KDDNDSIETS KKVLPSVSTS LVLAAGVGIA EAIALSLGSD FLMDVMAIPF
201: DSPMRIPAEQ FLRLRAYGAP PIVVALAAQG AFRGFKDTTT PLYAVVAGNV LNAVLDPILI FVLGFGISGA AAATVISEYL IAFILLWKLN ENVVLLSPQI
301: KVGRANQYLK SGGLLIGRTV ALLVPFTLAT SLAAQNGPTQ MAGHQIVLEI WLAVSLLTDA LAIAAQSLLA TTYSQGEYKQ AREVLFGVLQ VGLATGTGLA
401: AVLFITFEPF SSLFTTDSEV LKIALSGTLF VAGSQPVNAL AFVLDGLYYG VSDFGFAAYS MVIVGFISSL FMLVAAPTFG LAGIWTGLFL FMALRLVAGA
501: WRLGTRTGPW KMLWSAPEKP E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)