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AT5G17670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1075eggNOG:ENOG410IEX4EMBL:AB006706EMBL:AY062761
EMBL:AY128812EMBL:CP002688EnsemblPlants:AT5G17670EnsemblPlants:AT5G17670.1
entrez:831633ESTHER:arath-At5g17670Gene3D:3.40.50.1820GeneID:831633
GO:GO:0006505GO:GO:0006886GO:GO:0009507GO:GO:0009941
GO:GO:0016788Gramene:AT5G17670.1hmmpanther:PTHR15495hmmpanther:PTHR15495:SF17
HOGENOM:HOG000265856InterPro:IPR012908InterPro:IPR029058KEGG:ath:AT5G17670
OMA:NYPGAFYPfam:PF07819PhylomeDB:Q9FN84Proteomes:UP000006548
RefSeq:NP_197269.2STRING:3702.AT5G17670.1SUPFAM:SSF53474TAIR:AT5G17670
UniGene:At.27239UniProt:Q9FN84
Coordinates (TAIR10) chr5:+:5821082..5822600
Molecular Weight (calculated) 33409.50 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.13
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAMVTSLR LRPNFSAATS PSSSSSAGNV KYRPAVILPG LGNNTGDYKK LEVTLGEYGV PAVVAAVSRL DWFRNAAGLV DPAYWRGTLR PRPVLDWYLN
101: RIDDAVREAN ELAQGQGLCL IGHSAGGWLA RVYMEEYGNS DISLLLTLGT PHLPPPRGLP GVIDQTRGLL YYVEENCAKA VYTPELKYVC IAGRYIRGAR
201: LVDNADADID SDVTVGIDSG EGISELAIAS NKKSGTFRAR FVGQGYKQVC GRADVWGDGV VPEVSAHLEG ALNVSFDGVY HSPVGSDDET RPWYGSPVIV
301: KDWIHHLLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)