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AT5G47910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : respiratory burst oxidase homologue D
Curator
Summary (TAIR10)
NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.
Computational
Description (TAIR10)
respiratory burst oxidase homologue D (RBOHD); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, defense response to fungus, response to heat, defense response, negative regulation of programmed cell death; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47910-MONOMERBioGrid:20090BRENDA:1.6.3.1EC:1.11.1.-
EC:1.6.3.-eggNOG:ENOG410XNZYeggNOG:KOG0039EMBL:AB016886
EMBL:AF055357EMBL:AF424625EMBL:BT002651EMBL:CP002688
EnsemblPlants:AT5G47910EnsemblPlants:AT5G47910.1entrez:834842Gene3D:1.10.238.10
GeneID:834842Genevisible:Q9FIJ0GO:GO:0004601GO:GO:0005509
GO:GO:0005794GO:GO:0005886GO:GO:0007231GO:GO:0009408
GO:GO:0009611GO:GO:0016021GO:GO:0016174GO:GO:0033500
GO:GO:0043069GO:GO:0050832GO:GO:0072593Gramene:AT5G47910.1
hmmpanther:PTHR11972hmmpanther:PTHR11972:SF73HOGENOM:HOG000216670InParanoid:Q9FIJ0
InterPro:IPR000778InterPro:IPR002048InterPro:IPR011992InterPro:IPR013112
InterPro:IPR013121InterPro:IPR013130InterPro:IPR013623InterPro:IPR017927
InterPro:IPR017938InterPro:IPR018247iPTMnet:Q9FIJ0KEGG:ath:AT5G47910
KO:K13447OMA:VVHCANFPaxDb:Q9FIJ0PeroxiBase:3286
Pfam:PF01794Pfam:PF08022Pfam:PF08030Pfam:PF08414
Pfam:Q9FIJ0Pfscan:PS50222Pfscan:PS51384PhylomeDB:Q9FIJ0
PIR:T51804PRIDE:Q9FIJ0PRINTS:PR00466PRO:PR:Q9FIJ0
PROSITE:PS00018PROSITE:PS50222PROSITE:PS51384ProteinModelPortal:Q9FIJ0
Proteomes:UP000006548Reactome:R-ATH-209968RefSeq:NP_199602.1scanprosite:PS00018
SMR:Q9FIJ0STRING:3702.AT5G47910.1SUPFAM:SSF47473SUPFAM:SSF52343
SUPFAM:SSF63380TAIR:AT5G47910tair10-symbols:ATRBOHDtair10-symbols:RBOHD
TMHMM:TMhelixUniGene:At.23270UniProt:Q9FIJ0
Coordinates (TAIR10) chr5:+:19397585..19401768
Molecular Weight (calculated) 103914.00 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.24
Length 921 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMRRGNSSN DHELGILRGA NSDTNSDTES IASDRGAFSG PLGRPKRASK KNARFADDLP KRSNSVAGGR GDDDEYVEIT LDIRDDSVAV HSVQQAAGGG
101: GHLEDPELAL LTKKTLESSL NNTTSLSFFR STSSRIKNAS RELRRVFSRR PSPAVRRFDR TSSAAIHALK GLKFIATKTA AWPAVDQRFD KLSADSNGLL
201: LSAKFWECLG MNKESKDFAD QLFRALARRN NVSGDAITKE QLRIFWEQIS DESFDAKLQV FFDMVDKDED GRVTEEEVAE IISLSASANK LSNIQKQAKE
301: YAALIMEELD PDNAGFIMIE NLEMLLLQAP NQSVRMGDSR ILSQMLSQKL RPAKESNPLV RWSEKIKYFI LDNWQRLWIM MLWLGICGGL FTYKFIQYKN
401: KAAYGVMGYC VCVAKGGAET LKFNMALILL PVCRNTITWL RNKTKLGTVV PFDDSLNFHK VIASGIVVGV LLHAGAHLTC DFPRLIAADE DTYEPMEKYF
501: GDQPTSYWWF VKGVEGWTGI VMVVLMAIAF TLATPWFRRN KLNLPNFLKK LTGFNAFWYT HHLFIIVYAL LIVHGIKLYL TKIWYQKTTW MYLAVPILLY
601: ASERLLRAFR SSIKPVKMIK VAVYPGNVLS LHMTKPQGFK YKSGQFMLVN CRAVSPFEWH PFSITSAPGD DYLSVHIRTL GDWTRKLRTV FSEVCKPPTA
701: GKSGLLRADG GDGNLPFPKV LIDGPYGAPA QDYKKYDVVL LVGLGIGATP MISILKDIIN NMKGPDRDSD IENNNSNNNS KGFKTRKAYF YWVTREQGSF
801: EWFKGIMDEI SELDEEGIIE LHNYCTSVYE EGDARVALIA MLQSLQHAKN GVDVVSGTRV KSHFAKPNWR QVYKKIAVQH PGKRIGVFYC GMPGMIKELK
901: NLALDFSRKT TTKFDFHKEN F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)