AT5G40640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16277345..16280258 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64645.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.25 | ||||||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPPTGILAS LWQFILFIPY FTGLLLLGVI KGIVLCPLIC LTVAIGNSAI ILGLLPVHAI WTLYSIASAK QLGPILKIFL CLCVPLGVIL WLVVSILGSV 101: LGGAIYGFLS PIFATFDAVG EGKSNPFFHC FYDGTWSTVQ GSFTVVCDFK DVCFHSYFSF MDDLRTSTAN RHYYEIRLLQ IPGAVIVAVL GILVDFPVIS 201: LLALCKSPYM LFKGWHRLFH DLIGREGPFL ETMCVPIAGL VILLWPLAVV GAVLGSVVSS VFLGAYGGVV SYQESSFFFG LCYVVASVSI YDEYSNDVLD 301: MPEGSCFPRP IYRRNEEGAS TAFSGGLSRP NSFKTTPSRG GSNKGPMIDL KPLDLLEALF VECRRHGEIM VTKGIINSKD IEEAKSSKGS QVISFGLPAY 401: SLLHELLRSI KSNSTGLLLG DGVTEITTRN RPKDAFFDWF LNPFLILKDQ IEAANLSEEE EEYLGKLVLL FGDSERLKSS IVESESPPLT ELRKAELDAF 501: ARRLQGLTKS VSRYPTFRRH FVELVKKLSN DLDNKHNRFE GGSRSVPRPG KTVSRIFSQK SFKKKTSSNG SDQDSPNRGL RDIDIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)