AT5G40270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.915 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HD domain-containing metal-dependent phosphohydrolase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HD domain-containing metal-dependent phosphohydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: HD domain-containing metal-dependent phosphohydrolase family protein (TAIR:AT5G40290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16093394..16097093 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54676.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAYCDENLS SLPVFSSGAP ANELRFSKHV YDNVHGNIYL DPLCLKFIDT EQFQRLRELK QLGVTNMVYP GAVHSRFEHS LGVYWLAGET AQRLKNFQGM 101: ELGIDNYDLQ TVRLAGLLHD IGHGPFSHMF EREFLPKVIS DCQWSHELMS VNMIDHMVDT HHIDIDAQML KRVKDMILAS TEFSQLKGNA EKRFLYDIVA 201: NGRNGIDVDK FDYLVRDSRA CGLGSNFQFQ RLTETMRVLD NEICFRAKEY LSVHKLFATR ADLYRTVYTH SKVKAIELMI VDAMVKANNH LEISSMINDP 301: SEYWKLDDTI LKTIEIAPDP ELAEAKELIL RVRRRQLYQF CNEYAVPKDK IDHFKAVTPQ DIICSQKHTS LTLKEEDIAV TNVKIDLARG RENPLECINF 401: YKDYDSAEKF VIPEDRVSHL LPTTYQDMIV RVYAKKPELV EAVSEAFENF QMRTYGIKAQ VHATPEKKKR RVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)