suba logo
AT4G39030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23757404 (2013): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.
Computational
Description (TAIR10)
ENHANCED DISEASE SUSCEPTIBILITY 5 (EDS5); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: salicylic acid biosynthetic process, negative regulation of defense response, defense response, response to nematode; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G21340.1); Has 8328 Blast hits to 8315 proteins in 1724 species: Archae - 197; Bacteria - 6988; Metazoa - 52; Fungi - 30; Plants - 376; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
Protein Annotations
BioGrid:15338eggNOG:COG0534eggNOG:KOG1347EMBL:AF416569
EMBL:AK175482EMBL:AK176074EMBL:AK176272EMBL:AK176334
EMBL:AL035679EMBL:AL161594EMBL:CP002687EnsemblPlants:AT4G39030
EnsemblPlants:AT4G39030.1entrez:830058ExpressionAtlas:Q945F0GeneID:830058
Genevisible:Q945F0GO:GO:0005739GO:GO:0006855GO:GO:0006952
GO:GO:0009536GO:GO:0009624GO:GO:0009697GO:GO:0009751
GO:GO:0009941GO:GO:0015238GO:GO:0015297GO:GO:0016021
GO:GO:0031348GO:GO:0031969GO:GO:0042742GO:GO:0045087
Gramene:AT4G39030.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF116HOGENOM:HOG000029977
InParanoid:Q945F0InterPro:IPR002528KEGG:ath:AT4G39030ncoils:Coil
OMA:AMGMWICPaxDb:Q945F0Pfam:PF01554Pfam:Q945F0
PhylomeDB:Q945F0PRIDE:Q945F0PRO:PR:Q945F0ProteinModelPortal:Q945F0
Proteomes:UP000006548RefSeq:NP_195614.2SMR:Q945F0STRING:3702.AT4G39030.1
SwissPalm:Q945F0TAIR:AT4G39030tair10-symbols:EDS5tair10-symbols:SID1
TCDB:2.A.66.1.11TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.2846UniGene:At.66625UniProt:Q67ZP3UniProt:Q945F0
Coordinates (TAIR10) chr4:+:18185740..18188898
Molecular Weight (calculated) 59532.10 Da
IEP (calculated) 9.71
GRAVY (calculated) 0.42
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MLIKSQRLTL FSPLLSKTRR IPVNSHQTLV AESVITRRTL GAITATPSFH KNPVVIRRRI KLERVTRNCV RIDREIDEEE EEEEKERGDL VKQSIWEQMK
101: EIVKFTGPAM GMWICGPLMS LIDTVVIGQG SSIELAALGP GTVLCDHMSY VFMFLSVATS NMVATSLAKQ DKKEAQHQIS VLLFIGLVCG LMMLLLTRLF
201: GPWAVTAFTR GKNIEIVPAA NKYIQIRGLA WPFILVGLVA QSASLGMKNS WGPLKALAAA TIINGLGDTI LCLFLGQGIA GAAWATTASQ IVSAYMMMDS
301: LNKEGYNAYS FAIPSPQELW KISALAAPVF ISIFSKIAFY SFIIYCATSM GTHVLAAHQV MAQTYRMCNV WGEPLSQTAQ SFMPEMLYGA NRNLPKARTL
401: LKSLMIIGAT LGLVLGVIGT AVPGLFPGVY THDKVIISEM HRLLIPFFMA LSALPMTVSL EGTLLAGRDL KFVSSVMSSS FIIGCLTLMF VTRSGYGLLG
501: CWFVLVGFQW GRFGLYLRRL LSPGGILNSD GPSPYTVEKI KSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)