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AT5G17990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tryptophan biosynthesis 1
Curator
Summary (TAIR10)
Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.
Computational
Description (TAIR10)
tryptophan biosynthesis 1 (TRP1); FUNCTIONS IN: anthranilate phosphoribosyltransferase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 3, N-terminal (InterPro:IPR017459), Anthranilate phosphoribosyl transferase (InterPro:IPR005940), Glycosyl transferase, family 3 (InterPro:IPR000312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17990-MONOMERBioGrid:16942EC:2.4.2.18eggNOG:COG0547
eggNOG:KOG1438EMBL:AB015473EMBL:AY054506EMBL:AY093298
EMBL:CP002688EMBL:M96073EMBL:U58942EnsemblPlants:AT5G17990
EnsemblPlants:AT5G17990.1entrez:831666Gene3D:3.40.1030.10GeneID:831666
Genevisible:Q02166GO:GO:0000162GO:GO:0004048GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009941Gramene:AT5G17990.1
gramene_pathway:2.4.2.18gramene_pathway:TRPSYN-PWYHAMAP:MF_00211hmmpanther:PTHR11922
hmmpanther:PTHR11922:SF5HOGENOM:HOG000230451IntAct:Q02166InterPro:IPR000312
InterPro:IPR005940InterPro:IPR017459KEGG:00400+2.4.2.18KEGG:ath:AT5G17990
KO:K00766ncoils:CoilOMA:SWINISNPaxDb:Q02166
Pfam:PF00591Pfam:PF02885Pfam:Q02166PhylomeDB:Q02166
PRIDE:Q02166PRO:PR:Q02166ProteinModelPortal:Q02166Proteomes:UP000006548
RefSeq:NP_197300.1SMR:Q02166STRING:3702.AT5G17990.1SUPFAM:SSF47648
SUPFAM:SSF52418TAIR:AT5G17990tair10-symbols:pat1tair10-symbols:TRP1
TIGRfam:TIGR01245TIGRFAMs:TIGR01245UniGene:At.19968UniGene:At.71230
UniGene:At.75028UniPathway:UPA00035UniProt:Q02166
Coordinates (TAIR10) chr5:+:5957330..5959681
Molecular Weight (calculated) 46523.20 Da
IEP (calculated) 7.31
GRAVY (calculated) 0.18
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIAVATTSS IVSGIKLSGI LTSFNAVDDA SSSCGRSNLT GVRIFPTLSR RRFSSIGAVS PIRGDAQSSF SRSSFACSQN LGLSGGFSAA EALPPACANA
101: SPSSIKSFNQ LIETLIDRVD LSETEAESSL EFLLNEANEA LISAFLVLLR AKGETYEEIV GLARAMMKHA RKVEGLVDAV DIVGTGGDGA NTVNISTGSS
201: ILAAACGAKV AKQGNRSSSS ACGSADVLEA LGVVLDLGPE GIKRCVEEGG IGFMMSPMYH PAMKIVGPVR KKLKIKTVFN ILGPMLNPAR VSYAVVGVYH
301: KDLVVKMAKA LQRFGMKRAL VVHSCGLDEM SPLGGGLVYD VTPEKIEEFS FDPLDFGIPR CTLEDLRGGG PDYNADVLRR VLSGESGAIA DSLILNAAAA
401: LLVSNRVQTL AEGVTVAREV QSSGKAIKTL DSWINISNLA QKSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)