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AT2G04400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, copper ion binding; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G48220.1); Has 8050 Blast hits to 8050 proteins in 2237 species: Archae - 197; Bacteria - 5328; Metazoa - 3; Fungi - 164; Plants - 82; Viruses - 0; Other Eukaryotes - 2276 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04400-MONOMEREC:4.1.1.48eggNOG:COG0134eggNOG:KOG4201
EMBL:AC006951EMBL:AK117503EMBL:AY086973EMBL:BT025969
EMBL:CP002685EMBL:U18770EnsemblPlants:AT2G04400EnsemblPlants:AT2G04400.1
entrez:814980ExpressionAtlas:P49572Gene3D:3.20.20.70GeneID:814980
Genevisible:P49572GO:GO:0000162GO:GO:0004425GO:GO:0005507
GO:GO:0005829GO:GO:0009507GO:GO:0009570Gramene:AT2G04400.1
gramene_pathway:4.1.1.48gramene_pathway:TRPSYN-PWYHAMAP:MF_00134_Bhmmpanther:PTHR22854
hmmpanther:PTHR22854:SF10HOGENOM:HOG000230463InParanoid:P49572IntAct:P49572
InterPro:IPR001468InterPro:IPR011060InterPro:IPR013785InterPro:IPR013798
KEGG:00400+4.1.1.48KEGG:ath:AT2G04400KO:K01609OMA:RERDMIV
PaxDb:P49572PaxDb:Q1EBW5PaxDb:Q8GYM9Pfam:P49572
Pfam:PF00218PhylomeDB:P49572PIR:B84457PRIDE:P49572
PRO:PR:P49572PROSITE:PS00614ProteinModelPortal:P49572Proteomes:UP000006548
RefSeq:NP_178521.1scanprosite:PS00614SMR:P49572STRING:3702.AT2G04400.1
SUPFAM:SSF51366TAIR:AT2G04400UniGene:At.366UniGene:At.48418
UniPathway:UPA00035UniProt:P49572UniProt:Q1EBW5
Coordinates (TAIR10) chr2:+:1531208..1533578
Molecular Weight (calculated) 44579.90 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.20
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)