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AT2G38860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Encodes protease I (pfpI)-like protein YLS5.
Computational
Description (TAIR10)
YLS5; INVOLVED IN: response to ethylene stimulus, response to salt stress, leaf senescence, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G54600.1); Has 6230 Blast hits to 3821 proteins in 1388 species: Archae - 322; Bacteria - 5394; Metazoa - 98; Fungi - 11; Plants - 150; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
Protein Annotations
BioGrid:3810eggNOG:COG0693eggNOG:KOG2764EMBL:AB047808
EMBL:AC005770EMBL:AY048272EMBL:AY084644EMBL:AY090381
EMBL:CP002685EnsemblPlants:AT2G38860EnsemblPlants:AT2G38860.1EnsemblPlants:AT2G38860.2
entrez:818470ExpressionAtlas:Q9ZV19Gene3D:3.40.50.880GeneID:818470
Genevisible:Q9ZV19GO:GO:0019172GO:GO:0019243GO:GO:0019249
hmmpanther:PTHR11019hmmpanther:PTHR11019:SF122HOGENOM:HOG000241113InParanoid:Q9ZV19
IntAct:Q9ZV19InterPro:IPR002818InterPro:IPR029062MEROPS:C56.A01
OMA:CADYVDDPaxDb:Q9ZV19Pfam:PF01965PhylomeDB:Q9ZV19
PIR:C84810PRIDE:Q9ZV19PRO:PR:Q9ZV19ProteinModelPortal:Q9ZV19
Proteomes:UP000006548RefSeq:NP_030434.1RefSeq:NP_850303.1SMR:Q9ZV19
STRING:3702.AT2G38860.2SUPFAM:SSF52317SwissPalm:Q9ZV19TAIR:AT2G38860
tair10-symbols:YLS5UniGene:At.25261UniProt:Q8S8L7
Coordinates (TAIR10) chr2:-:16233629..16235207
Molecular Weight (calculated) 41670.70 Da
IEP (calculated) 5.01
GRAVY (calculated) 0.24
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAVQKSAL LLCGDYMEAY ETIVPLYVLQ SFGVSVHCVS PNRNAGDRCV MSAHDFLGLE LTLNANFDDV TPENYDVIII PGGRFTELLS ADEKCVDLVA
101: RFAESKKLIF TSCHSQVMLM AAGILAGGVK CTAFESIKPL IELSGGEWWQ QPGIQSMFEI TDCVKDGNFM STVGWPTLGH GIKLLLESLG GKVCSLEKKQ
201: ASVLFLIGDY VEDYGINVPF RALQALGCKV DAVTPNKKKG EVCATAVYDL EDGRQIPAEK RGHNFFVTAS WDDICVDDYD CVVVPGGRSP ELLVMNEKAV
301: ALVKSFAEKD KVFAAIGQGK LLLAATGVLK GKRCASGKGM KVMVKVAGGE AVMEKGCVTD GKVVTAASAT DLPAFLFDLS TALGLTVMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)