AT2G38860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.932 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Class I glutamine amidotransferase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes protease I (pfpI)-like protein YLS5. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
YLS5; INVOLVED IN: response to ethylene stimulus, response to salt stress, leaf senescence, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G54600.1); Has 6230 Blast hits to 3821 proteins in 1388 species: Archae - 322; Bacteria - 5394; Metazoa - 98; Fungi - 11; Plants - 150; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:16233629..16235207 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41670.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 389 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASAVQKSAL LLCGDYMEAY ETIVPLYVLQ SFGVSVHCVS PNRNAGDRCV MSAHDFLGLE LTLNANFDDV TPENYDVIII PGGRFTELLS ADEKCVDLVA 101: RFAESKKLIF TSCHSQVMLM AAGILAGGVK CTAFESIKPL IELSGGEWWQ QPGIQSMFEI TDCVKDGNFM STVGWPTLGH GIKLLLESLG GKVCSLEKKQ 201: ASVLFLIGDY VEDYGINVPF RALQALGCKV DAVTPNKKKG EVCATAVYDL EDGRQIPAEK RGHNFFVTAS WDDICVDDYD CVVVPGGRSP ELLVMNEKAV 301: ALVKSFAEKD KVFAAIGQGK LLLAATGVLK GKRCASGKGM KVMVKVAGGE AVMEKGCVTD GKVVTAASAT DLPAFLFDLS TALGLTVMF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)