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AT1G33100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.797
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 9099 Blast hits to 9057 proteins in 1901 species: Archae - 151; Bacteria - 6395; Metazoa - 141; Fungi - 328; Plants - 1351; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC006424EMBL:AC021045
EMBL:CP002684EnsemblPlants:AT1G33100EnsemblPlants:AT1G33100.1entrez:840206
GeneID:840206Genevisible:F4HPH2GO:GO:0015238GO:GO:0015297
GO:GO:0016021Gramene:AT1G33100.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF102
InParanoid:F4HPH2InterPro:IPR002528KEGG:ath:AT1G33100KO:K03327
OMA:CISINALPaxDb:F4HPH2Pfam:PF01554PRIDE:F4HPH2
ProteinModelPortal:F4HPH2Proteomes:UP000006548RefSeq:NP_174586.2SMR:F4HPH2
STRING:3702.AT1G33100.1TAIR:AT1G33100TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.51898UniProt:F4HPH2
Coordinates (TAIR10) chr1:+:11997683..12001308
Molecular Weight (calculated) 53508.60 Da
IEP (calculated) 8.29
GRAVY (calculated) 0.75
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRGGELTE ALVKKTGREE EDELGMKEKV WIESKKLWVV AAPAIFTRYS TFGVSMVTQA FIGHLGPTEL AAYSITFTIL LRFSNGILLG MAGALGTLCG
101: QAYGAKQYQM LGIYLQRSWI VLTGGTICLM PVFIFAGPIL LALGQEERIV RVARVLALWV IGINFSFVPS FTCQMFLQAQ SKNKIISYVT AVSLGLHVFF
201: SWLLVAHFNF GITGAMTSML IAFWLPIIVQ LLYVTCGGCK DTWRGFSMLA FKDLWPVLKL SLSSGGMLCL ELWYNSVLVL LTGNLKNAEV ALDALAICIS
301: INALEMMIAL GFLAAVSVRV SNELGSGNPK GAKFATLIAV FTSLSIGIVL FFVFLFLRGR ISYIFTTSEA VAAEVADLSP LLAFSILLNS VQPVLSGVAI
401: GAGWQGYVAY VNLACYYLVG IPIGVILGYV VGLQVKGVWI GMLFGIFVQT CVLTVMTLRT DWDQQVSTSL RNINRWVVPE SRDANQISSE E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)