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AT1G30490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator
Summary (TAIR10)
Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain.
Computational
Description (TAIR10)
PHAVOLUTA (PHV); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT2G34710.1); Has 3472 Blast hits to 3351 proteins in 286 species: Archae - 0; Bacteria - 32; Metazoa - 920; Fungi - 121; Plants - 2372; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:25163eggNOG:ENOG410IFI0eggNOG:ENOG410XQ3REMBL:AC009917EMBL:AJ440967EMBL:AK221046EMBL:AK226570
EMBL:CP002684EMBL:Y10922EnsemblPlants:AT1G30490EnsemblPlants:AT1G30490.1entrez:839928Gene3D:1.10.10.60Gene3D:3.30.530.20
GeneID:839928Genevisible:O04292GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008289
GO:GO:0009855GO:GO:0009880GO:GO:0009943GO:GO:0009944GO:GO:0010014GO:GO:0010072GO:GO:0030154
GO:GO:0080060Gramene:AT1G30490.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF191HOGENOM:HOG000272677InParanoid:O04292IntAct:O04292
InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057InterPro:IPR013978InterPro:IPR023393KEGG:ath:AT1G30490KO:K09338
ncoils:CoilOMA:DITIMINPaxDb:O04292Pfam:O04292Pfam:PF00046Pfam:PF01852Pfam:PF08670
Pfscan:PS50071Pfscan:PS50848PhylomeDB:O04292PIR:H86429PRIDE:O04292PRO:PR:O04292PROSITE:PS50071
PROSITE:PS50848ProteinModelPortal:O04292Proteomes:UP000006548RefSeq:NP_174337.1SMART:SM00234SMART:SM00389SMR:O04292
STRING:3702.AT1G30490.1SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT1G30490tair10-symbols:ATHB9tair10-symbols:PHVUniGene:At.27961
UniGene:At.33151UniProt:O04292
Coordinates (TAIR10) chr1:-:10796328..10800744
Molecular Weight (calculated) 92406.90 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.22
Length 841 amino acids
Sequence (TAIR10)
(BLAST)
001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)