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AT5G50010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors;transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors;transcription regulators; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G64340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20311eggNOG:ENOG410IKY0eggNOG:ENOG410Y8WPEMBL:AB026650
EMBL:AK117155EMBL:BT005301EMBL:CP002688EnsemblPlants:AT5G50010
EnsemblPlants:AT5G50010.1entrez:835065GeneID:835065Genevisible:Q9FGB0
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT5G50010.1hmmpanther:PTHR36066HOGENOM:HOG000090494
InParanoid:Q9FGB0IntAct:Q9FGB0InterPro:IPR011598KEGG:ath:AT5G50010
OMA:STRGSYQPaxDb:Q9FGB0Pfam:Q9FGB0Pfscan:PS50888
PhylomeDB:Q9FGB0PRIDE:Q9FGB0PRO:PR:Q9FGB0PROSITE:PS50888
ProteinModelPortal:Q9FGB0Proteomes:UP000006548RefSeq:NP_199812.1STRING:3702.AT5G50010.1
TAIR:AT5G50010UniGene:At.49153UniProt:Q9FGB0
Coordinates (TAIR10) chr5:+:20349556..20350491
Molecular Weight (calculated) 34715.70 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.60
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQDRGFGFP TQRLCSLSSL ALSHLGKQDL NLVSKTCGDT TDMFSTRGSY QVSTQVSQSY FDGYCGWVHG SSHLQQQFLP PQNQCMKQVP LQVDGVISKA
101: EEQCSQKRFL VFDQSGDQTT LLLASDIRKS FETLKQHACP DMKEELQRSN KDLFVCHGMQ GNSEPDLKED SEELNALLYS EDESGYCSEE DEVTSADHSP
201: SIVVSGREDQ KTFLGSYGQP LNAKKRKILE TSNESMRDAE SSCGSCDNTR ISFLKRSKLS SNKIGEEKIF ETVSLLRSVV PGEELVDPIL VIDRAIDYLK
301: SLKMEAKNRE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)