AT2G29660.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.885 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : zinc finger (C2H2 type) family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
zinc finger (C2H2 type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT5G54630.1); Has 407 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:12679346..12680467 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41606.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.48 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
Length | 373 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD 101: TTNQPDPETR IHQQTEFEIS SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS PVINRILKIH NSSKILTRFE 201: EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN 301: VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP RAVLPCFVIV YTV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)