AT1G71870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27032456..27034895 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54796.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.67 | ||||||||||||||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDKIQSDDF TSHKNPTLPQ VIEELKELWA MVLPITAMNC LVYVRAVVSV LFLGRLGSLE LAGGALSIGF TNITGYSVMV GLASGLEPVC SQAYGSKNWD 101: LLTLSLHRMV VILLMASLPI SLLWINLGPI MLFMGQNPEI TATAAEYCLY ALPDLLTNTL LQPLRVYLRS QRVTKPMMWC TLAAVAFHVP LNYWLVMVKH 201: WGVPGVAIAS VVTNLIMVVL LVGYVWVSGM LQKRVSGDGD GGSTTMVAVV AQSSSVMELV GGLGPLMRVA VPSCLGICLE WWWYEIVIVM GGYLENPKLA 301: VAATGILIQT TSLMYTVPMA LAGCVSARVG NELGAGRPYK ARLAANVALA CAFVVGALNV AWTVILKERW AGLFTGYEPL KVLVASVMPI VGLCELGNCP 401: QTTGCGILRG TGRPAVGAHV NLGSFYFVGT PVAVGLAFWL KIGFSGLWFG LLSAQAACVV SILYAVLART DWEGEAVKAM RLTSLEMRKV GQDEESSLLL 501: LDDEKLGDVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)