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AT1G70210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYCLIN D1;1
Curator
Summary (TAIR10)
Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.
Computational
Description (TAIR10)
CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink).
Protein Annotations
BioGrid:28578DNASU:843357eggNOG:ENOG410XRKCeggNOG:KOG0656
EMBL:AC002062EMBL:AF208693EMBL:AK117189EMBL:BT005315
EMBL:CP002684EMBL:X83369EnsemblPlants:AT1G70210EnsemblPlants:AT1G70210.1
entrez:843357Gene3D:1.10.472.10GeneID:843357Genevisible:P42751
GO:GO:0005634GO:GO:0007049GO:GO:0051301Gramene:AT1G70210.1
hmmpanther:PTHR10177hmmpanther:PTHR10177:SF206HOGENOM:HOG000242458InParanoid:P42751
IntAct:P42751InterPro:IPR004367InterPro:IPR006671InterPro:IPR011031
InterPro:IPR013763KEGG:ath:AT1G70210KO:K18810OMA:FFISHAT
PaxDb:P42751Pfam:P42751Pfam:PF00134Pfam:PF02984
PhylomeDB:P42751PIR:A96725PIR:S51650PRIDE:P42751
PRO:PR:P42751PROSITE:PS00292ProteinModelPortal:P42751Proteomes:UP000006548
RefSeq:NP_177178.1scanprosite:PS00292SMART:SM00385SMART:SM01332
SMR:P42751STRING:3702.AT1G70210.1SUPFAM:SSF47954SUPFAM:SSF48695
TAIR:AT1G70210tair10-symbols:ATCYCD1;1tair10-symbols:CYCD1;1UniGene:At.10298
UniProt:P42751
Coordinates (TAIR10) chr1:+:26440015..26441980
Molecular Weight (calculated) 38278.50 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.05
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)