AT5G62550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25105839..25107875 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 53427.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKSMEKSVS SAASGNSINS KLRYPLRSAL RSKEGKPPVP DFSASSMPRR ARVVSAVSQS TTVLDLSGKK SVDRTKLPPR RLSIPNKPTS NSSVKSVSSS 101: VTSLSEVKPK RSRIVPRSFN ETTTPVSSNL RSSVTRKKVE DLSSSTYWLT HIKLAESVAK HSISLGFFKL ALHAGCEPLD KMKEELKLYA RRNNMDGLAD 201: AMKELSELYN ISEESNQVQV SETSSVVAEE TAMSLNNDND VQSSFSTPGN SNITSEITKD DALQDSTVTK TTKEKDALQD SSVTETTKEK DALQDSSVTE 301: TSKEEGALQD SSVTETTKEE DALQDSSVTE TTKEEQALET VTQGRTRKSL EVINVNQEND SEVVQESEEG LRPSADGVQI VTVVKPSDKK RARKETVPKN 401: NLPVRTKKSL ATNSANSKTV QVNKDDKSQK KSERITKPRT KRVQEESKKS IKKSTAKEGE VKSLKQTEKM ENKENTVVVG AGEDIQV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)