AT2G47500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11938 Blast hits to 11443 proteins in 432 species: Archae - 0; Bacteria - 1; Metazoa - 5987; Fungi - 1397; Plants - 1883; Viruses - 0; Other Eukaryotes - 2670 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19493247..19497882 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108785.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 983 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATATEDGG LSFTVASVME DVLQQHGNGL RDHDLVSRRA EEAASRRYEA ANWLRRMVGV VGAKDLPAEP TEEGLRLGLR SGIILCKVLN KVQPGAVSKV 101: VESPCDAILV ADGAPLSAFQ YFENVRNFLV AIQEMGFPTF EASDLEQGGN ASRVVNCVLA IKSYDEWKQS GGIGVWKFGG NIKPPALGKS SFVRKNSEPF 201: MNSLSRTSSI NNEKAPSEND SNKLSSPSSL STLVRAVLSD KKPEDVPKLI ESLLSKVVEE FENRVTNQYE LVRAAPREST SSQNNRSFLK PLGEREREEK 301: SFKAIKKDDH NSQILDEKMK TRQFKQLTIF NQQQEDIEGL RQTLYTTRAG MQFMQKKFQE EFSSLGMHVH GLAHAASGYH RVLEENRKLY NQVQDLKGSI 401: RVYCRVRPFL PGQSSFSSTI GNMEDDTIGI NTASRHGKSL KSFTFNKVFG PSATQEEVFS DMQPLIRSVL DGYNVCIFAY GQTGSGKTFT MSGPRDLTEK 501: SQGVNYRALG DLFLLAEQRK DTFRYDIAVQ MIEIYNEQVR DLLVTDGSNK RLEIRNSSQK GLSVPDASLV PVSSTFDVID LMKTGHKNRA VGSTALNDRS 601: SRSHSCLTVH VQGRDLTSGA VLRGCMHLVD LAGSERVDKS EVTGDRLKEA QHINRSLSAL GDVIASLAHK NPHVPYRNSK LTQLLQDSLG GQAKTLMFVH 701: ISPEADAVGE TISTLKFAER VATVELGAAR VNNDTSDVKE LKEQIATLKA ALARKEAESQ QNNILKTPGG SEKHKAKTGE VEIHNNNIMT KKSESCEVEE 801: ITVNSPPWPP VASPGQAYRE DDRSFGSSEW VDKVMVNNRQ DEMRRVESLW GGATTENGIG ILPEDFYRRD LASDTSRIFS EHSYNIFMGN NNSTDDLDAA 901: TSDSSEPDLL WQFNQSTKIP TRSNIESKLK KPVSKPIRSP QSRNNSNNTV SRPLASQKVG NGPRGMKQFG PADMKRKATN ARH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)