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AT2G02820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 88
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.
Computational
Description (TAIR10)
myb domain protein 88 (MYB88); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G14350.2); Has 8359 Blast hits to 7654 proteins in 549 species: Archae - 0; Bacteria - 2; Metazoa - 785; Fungi - 539; Plants - 5060; Viruses - 3; Other Eukaryotes - 1970 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:CP002685EnsemblPlants:AT2G02820
EnsemblPlants:AT2G02820.1entrez:814812ExpressionAtlas:F4IRB5Gene3D:1.10.10.60
GeneID:814812GO:GO:0003677GO:GO:0003700GO:GO:0007049
Gramene:AT2G02820.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF461InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930InterPro:IPR028311PANTHER:PTHR10641:SF461
PaxDb:F4IRB5Pfam:PF13921Pfscan:PS51294PRIDE:F4IRB5
PROSITE:PS51294ProteinModelPortal:F4IRB5Proteomes:UP000006548RefSeq:NP_565291.2
SMART:SM00717SMR:F4IRB5STRING:3702.AT2G02820.2SUPFAM:SSF46689
TAIR:AT2G02820tair10-symbols:AtMYB88tair10-symbols:MYB88UniGene:At.11576
UniProt:F4IRB5
Coordinates (TAIR10) chr2:-:804890..807139
Molecular Weight (calculated) 51341.70 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.90
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETTKQNNM KKKKKILLHS DDSKKKERHI VTWSPEEDDI LRKQISLQGT ENWAIIASKF NDKSTRQCRR RWYTYLNSDF KRGGWSPEED TLLCEAQRLF
101: GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR AKHEAMAKEN RIACCVNSDN KRLLFPDGIS TPLKAESESP LTKKMRRSHI PNLTEIKSYG DRSHIKVEST
201: MNQQRRHPFS VVAHNATSSD GTEEQKQIGN VKESDGEDKS NQEVFLKKDD SKVTALMQQA ELLSSLAQKV NADNTDQSME NAWKVLQDFL NKSKENDLFR
301: YGIPDIDFQL DEFKDLVEDL RSSNEDSQSS WRQPDLHDSP ASSEYSSGSG SGSTIMTHPS GDKTQQLMSD TQTTSHQQNG GELLQDNGIV SDATVEQVGL
401: LSTGHDVLKN SNETVPIPGE EEFNSPVQVT PLFRSLAAGI PSPQFSESVS IHLTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)