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AT5G61270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome-interacting factor7
Curator
Summary (TAIR10)
Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light?absorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.
Computational
Description (TAIR10)
phytochrome-interacting factor7 (PIF7); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:21492eggNOG:ENOG410IVY3eggNOG:ENOG4111ACWEMBL:AB010073
EMBL:AF488604EMBL:AJ630484EMBL:AK220640EMBL:AY568656
EMBL:BX831447EMBL:CP002688EnsemblPlants:AT5G61270EnsemblPlants:AT5G61270.1
entrez:836248ExpressionAtlas:Q570R7Gene3D:4.10.280.10GeneID:836248
GO:GO:0003690GO:GO:0003700GO:GO:0006351GO:GO:0006355
GO:GO:0009416GO:GO:0009585GO:GO:0009704GO:GO:0016607
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF165HOGENOM:HOG000097081InParanoid:Q570R7
IntAct:Q570R7InterPro:IPR011598KEGG:ath:AT5G61270ncoils:Coil
OMA:HNYESKDPaxDb:Q570R7Pfam:PF00010Pfam:Q570R7
Pfscan:PS50888PhylomeDB:Q570R7PRIDE:Q570R7PRO:PR:Q570R7
PROSITE:PS50888ProteinModelPortal:Q570R7Proteomes:UP000006548RefSeq:NP_001032117.1
RefSeq:NP_200935.2SMART:SM00353SMR:C0SVV2SMR:Q570R7
STRING:3702.AT5G61270.1SUPFAM:SSF47459TAIR:AT5G61270tair10-symbols:PIF7
UniGene:At.29114UniProt:C0SVV2UniProt:Q570R7
Coordinates (TAIR10) chr5:-:24638873..24640439
Molecular Weight (calculated) 40828.70 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.95
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNYGVKELT WENGQLTVHG LGDEVEPTTS NNPIWTQSLN GCETLESVVH QAALQQPSKF QLQSPNGPNH NYESKDGSCS RKRGYPQEMD RWFAVQEESH
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)