AT4G23860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PHD finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PHD finger protein-related; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, N-recognin (InterPro:IPR003126); Has 484 Blast hits to 449 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 240; Fungi - 124; Plants - 56; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12409336..12411336 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50498.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.33 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASGVFEDEA EGTITINEYI ERLDAEELAA DLVLGGDEGD ECTFPKGYMK RQAIFSCITC TPEGNAGICT ACCLSCHDGH ELLELWTKRN FRCDCGNSKF 101: GTLACKLLPS KDIENSENSY NHNFKGLYCT CDRPYPDPNV EEQVEMIQCC LCEDWFHEEH LGLTPSDSVG SQIPRDEESE PIYEDFICQN CSPACSFLTL 201: YPENLWVVAK VDSTGSANAC SETIELDKNH MDSEPGQPEN GTDAEKSVVG KCSETISDSE PGQPENGTEA EKSVVQKCSE KIDESEAGQP ENSTEAEKFV 301: VRKCSEKIDG SENVPAAGCV IRTDLNSCPE FEKKPLFLTK NWRNILCRCE KCLEMYKQRK VSYLLDAEDT IVEYEKKAKE KRTEKLEKQE GEALDLLNNL 401: DHVSKVELLH GIKDFQDGLQ GLMESAGPSK AITSADIEQM FSKLKNKRKR ME |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)