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AT5G27740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATPase family associated with various cellular activities (AAA)
Curator
Summary (TAIR10)
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0470eggNOG:KOG2035EMBL:AC069556EMBL:AY074381
EMBL:AY091236EMBL:CP002688EnsemblPlants:AT5G27740EnsemblPlants:AT5G27740.1
entrez:832836Gene3D:3.40.50.300GeneID:832836Genevisible:Q8VXX4
GO:GO:0003677GO:GO:0005524GO:GO:0005634GO:GO:0006261
Gramene:AT5G27740.1hmmpanther:PTHR11669hmmpanther:PTHR11669:SF1HOGENOM:HOG000224153
InParanoid:Q8VXX4InterPro:IPR003593InterPro:IPR008921InterPro:IPR027417
KEGG:ath:AT5G27740KO:K10756OMA:QREFKVVPaxDb:Q8VXX4
Pfam:PF08542Pfam:PF13177Pfam:Q8VXX4PhylomeDB:Q8VXX4
PRIDE:Q8VXX4PRO:PR:Q8VXX4ProteinModelPortal:Q8VXX4Proteomes:UP000006548
Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174411
Reactome:R-ATH-5651801Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169
Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6782135Reactome:R-ATH-6782210
Reactome:R-ATH-69091RefSeq:NP_198126.1SMART:SM00382SMR:Q8VXX4
STRING:3702.AT5G27740.1SUPFAM:SSF48019SUPFAM:SSF52540TAIR:AT5G27740
tair10-symbols:EMB161tair10-symbols:EMB251tair10-symbols:EMB2775tair10-symbols:RFC3
UniGene:At.19785UniProt:Q8VXX4
Coordinates (TAIR10) chr5:+:9823831..9826869
Molecular Weight (calculated) 40602.70 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.29
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MLWVDKYRPK SLDKVIVHED IAQKLKKLVS EQDCPHLLFY GPSGSGKKTL IMALLKQIYG ASAEKVKVEN RAWKVDAGSR TIDLELTTLS STNHVELTPS
101: DAGFQDRYIV QEIIKEMAKN RPIDTKGKKG YKVLVLNEVD KLSREAQHSL RRTMEKYSSS CRLILCCNSS SKVTEAIKSR CLNVRINAPS QEEIVKVLEF
201: VAKKESLQLP QGFAARIAEK SNRSLRRAIL SLETCRVQNY PFTGNQVISP MDWEEYVAEI ATDMMKEQSP KKLFQVRGKV YELLVNCIPP EVILKRLLHE
301: LLKKLDSELK LEVCHWAAYY EHRMRLGQKA IFHIEAFVAK FMSIYKNFLI STFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)