suba logo
AT2G41460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.997
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19372224 (2009): plastid plastid stroma
  • PMID:31520498 (2020): mitochondrion
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : apurinic endonuclease-redox protein
Curator
Summary (TAIR10)
apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
Computational
Description (TAIR10)
apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G41460-MONOMERBioCyc:ARA:GQT-950-MONOMEREC:4.2.99.18eggNOG:COG0708
eggNOG:KOG1294EMBL:AC004625EMBL:CP002685EMBL:X76912
EnsemblPlants:AT2G41460EnsemblPlants:AT2G41460.1entrez:818744ExpressionAtlas:P45951
Gene3D:1.10.720.30Gene3D:3.60.10.10GeneID:818744Genevisible:P45951
GO:GO:0003677GO:GO:0003906GO:GO:0005634GO:GO:0006284
GO:GO:0008311GO:GO:0042644GO:GO:0045893GO:GO:0046872
GO:GO:0090305hmmpanther:PTHR22748hmmpanther:PTHR22748:SF8InParanoid:P45951
InterPro:IPR003034InterPro:IPR004808InterPro:IPR005135InterPro:IPR020847
InterPro:IPR020848OMA:QRENFDIPANTHER:PTHR22748PaxDb:P45951
Pfam:P45951Pfam:PF02037Pfam:PF03372Pfscan:PS50800
Pfscan:PS51435PhylomeDB:P45951PIR:T02441PRIDE:P45951
PRO:PR:P45951PROSITE:PS00726PROSITE:PS00727PROSITE:PS00728
PROSITE:PS50800PROSITE:PS51435ProteinModelPortal:P45951Proteomes:UP000006548
Reactome:R-ATH-110357Reactome:R-ATH-110362Reactome:R-ATH-110373Reactome:R-ATH-174414
Reactome:R-ATH-5651801Reactome:R-ATH-69183Reactome:R-ATH-73930Reactome:R-ATH-73933
RefSeq:NP_181677.1scanprosite:PS00726scanprosite:PS00727scanprosite:PS00728
SMART:SM00513SMR:P45951STRING:3702.AT2G41460.1SUPFAM:SSF56219
SUPFAM:SSF68906TAIR:AT2G41460tair10-symbols:ARPTIGRfam:TIGR00195
TIGRfam:TIGR00633TIGRFAMs:TIGR00633UniGene:At.25567UniProt:P45951
Coordinates (TAIR10) chr2:+:17285731..17288769
Molecular Weight (calculated) 60263.80 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.58
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNVLQFGLQ SSAIYVAKFL VVPLRSLRVG SSFVGVGVGT RSFNKRLMSN ATAFSINNSK RKELKIPGAA IDQNCHQMGS DTDRDEMGTL QDDRKEIEAM
101: TVQELRSTLR KLGVPVKGRK QELISTLRLH MDSNLPDQKE TSSSTRSDSV TIKRKISNRE EPTEDECTNS EAYDIEHGEK RVKQSTEKNL KAKVSAKAIA
201: KEQKSLMRTG KQQIQSKEET SSTISSELLK TEEIISSPSQ SEPWTVLAHK KPQKDWKAYN PKTMRPPPLP EGTKCVKVMT WNVNGLRGLL KFESFSALQL
301: AQRENFDILC LQETKLQVKD VEEIKKTLID GYDHSFWSCS VSKLGYSGTA IISRIKPLSV RYGTGLSGHD TEGRIVTAEF DSFYLINTYV PNSGDGLKRL
401: SYRIEEWDRT LSNHIKELEK SKPVVLTGDL NCAHEEIDIF NPAGNKRSAG FTIEERQSFG ANLLDKGFVD TFRKQHPGVV GYTYWGYRHG GRKTNKGWRL
501: DYFLVSQSIA ANVHDSYILP DINGSDHCPI GLILKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)