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AT1G69120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.
Computational
Description (TAIR10)
APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
BioGrid:28465DIP:DIP-33763NeggNOG:COG5068eggNOG:KOG0014
EMBL:AC008262EMBL:AF466771EMBL:AF466772EMBL:AF466773
EMBL:AF466774EMBL:AF466775EMBL:AF466776EMBL:AF466777
EMBL:AF466778EMBL:AF466779EMBL:AF466780EMBL:AF466781
EMBL:AF466782EMBL:AF466783EMBL:AF466784EMBL:AF466785
EMBL:AK175933EMBL:AY087956EMBL:BT004113EMBL:BT004951
EMBL:CP002684EMBL:Z16421EnsemblPlants:AT1G69120EnsemblPlants:AT1G69120.1
entrez:843244GeneID:843244Genevisible:P35631GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009908
GO:GO:0009933GO:GO:0010582GO:GO:0030154GO:GO:0045893
GO:GO:0046982Gramene:AT1G69120.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF155
HOGENOM:HOG000155301InParanoid:P35631IntAct:P35631InterPro:IPR002100
InterPro:IPR002487KEGG:ath:AT1G69120KO:K09264ncoils:Coil
OMA:KSHLMLEPaxDb:P35631Pfam:P35631Pfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:P35631
PIR:S27109PRIDE:P35631PRINTS:PR00404PRO:PR:P35631
PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:P35631
Proteomes:UP000006548RefSeq:NP_177074.1scanprosite:PS00350SMART:SM00432
SMR:P35631STRING:3702.AT1G69120.1SUPFAM:SSF55455TAIR:AT1G69120
tair10-symbols:AGL7tair10-symbols:AP1UniGene:At.10200UniGene:At.24302
UniProt:P35631
Coordinates (TAIR10) chr1:-:25982576..25986102
Molecular Weight (calculated) 30184.30 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.89
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)