AT1G64150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterized protein family (UPF0016) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterized protein family (UPF0016); LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT4G13590.1); Has 1632 Blast hits to 1475 proteins in 546 species: Archae - 26; Bacteria - 846; Metazoa - 163; Fungi - 173; Plants - 204; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23809047..23812579 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39075.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLNLSESL RIPFQNPRPP KSDFSSTSSS PSSSSRRCVS AYPIPIGFSV RNQYFSRCLT QLRRNESQQL GFRCFQRNDA ACYLEKAESE EHDRNLDVLV 101: ESSIAHSRRE IQRVLMFLAV SGSVALLGTD PAFAASSIPN VTQSLVTSFG DLGDISSGFA SAFLLIFFSE LGDKTFFIAA LLAARNSAAT VFVGTFGALG 201: IMTIISVVLG RTFHYVDEVL PFRFGGTDLP IDDIAAVCLL VYFGVSTLLD AVSDEGKADE EQKEAELAVS ELSGNGAGIV AAANTIISTF ALVFVAEWGD 301: KSFFSTIALA AASSPLGVIA GALAGHGAAT LLAVLGGSLL GNFLSEKAIA YVGGVLFLVF AAVTVAEIVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)