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AT3G15520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22829322 (2012): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 38 (TAIR:AT3G01480.1); Has 713 Blast hits to 711 proteins in 154 species: Archae - 5; Bacteria - 374; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15520-MONOMERBioGrid:6125EC:5.2.1.8eggNOG:COG0652
eggNOG:ENOG410IIEQEMBL:AB022218EMBL:AC024081EMBL:BT025317
EMBL:CP002686EnsemblPlants:AT3G15520EnsemblPlants:AT3G15520.1entrez:820791
Gene3D:2.40.100.10GeneID:820791Genevisible:P82869GO:GO:0003755
GO:GO:0006457GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0009543GO:GO:0009579GO:GO:0031977Gramene:AT3G15520.1
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF174HOGENOM:HOG000012661InParanoid:P82869
InterPro:IPR002130InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT3G15520
OMA:PANPNMKPANTHER:PTHR11071PaxDb:P82869Pfam:P82869
Pfam:PF00160Pfscan:PS50072PhylomeDB:P82869PRIDE:P82869
PRO:PR:P82869PROSITE:PS50072ProteinModelPortal:P82869Proteomes:UP000006548
RefSeq:NP_188171.2STRING:3702.AT3G15520.1SUPFAM:SSF50891TAIR:AT3G15520
UniGene:At.25187UniGene:At.48665UniGene:At.72746UniProt:P82869
Coordinates (TAIR10) chr3:-:5249739..5252432
Molecular Weight (calculated) 50485.40 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.14
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPLSSSTV VSHRLFFLHP SPLNRKFLFV KPKLPFNRTN SGDFRMRLHS TSSKTGTKEL IHSCNSSIDS KLNTFEAGSK NLEKLVATIL IFVQVWSPLP
101: LFGLDSAYIS PAEAVLYSPD TKVPRTGELA LRRAIPANPS MKIIQASLED ISYLLRIPQR KPYGTMESNV KKALKVAIDD KDKILASIPV DLKDKGSELY
201: TTLIDGKGGL QALITSIKKQ DPDKVSLGLA ASLDTVADLE LLQASGLSFL LPQQYLNYPR LAGRGTVEIT IEKADGSTFS AEAGGDQRKS ATVQIVIDGY
301: SAPLTAGNFA KLVTSGAYDG AKLNTVNQAV ITEDGSGKVE SVSVPLEVMP SGQFEPLYRT PLSVQDGELP VLPLSVYGAV AMAHSENSEE YSSPYQFFFY
401: LYDKRNSGLG GLSFDEGQFS VFGYTIAGKD ILGQIKTGDI IKSAKLIEGQ DRLSLPVQNN NINEST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)