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AT2G32640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lycopene beta/epsilon cyclase protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIMGeggNOG:ENOG410XPVBEMBL:AK226858EMBL:CP002685
EnsemblPlants:AT2G32640EnsemblPlants:AT2G32640.1entrez:817824ExpressionAtlas:Q0WVA1
Gene3D:3.50.50.60GeneID:817824GO:GO:0009507GO:GO:0016117
GO:GO:0016705Gramene:AT2G32640.1hmmpanther:PTHR32098hmmpanther:PTHR32098:SF5
InterPro:IPR023753KEGG:ath:AT2G32640OMA:VILNWSGPfam:PF05834
PhylomeDB:Q0WVA1Proteomes:UP000006548RefSeq:NP_180823.3SMR:Q0WVA1
STRING:3702.AT2G32640.1SUPFAM:SSF51905TAIR:AT2G32640UniGene:At.38041
UniProt:Q0WVA1
Coordinates (TAIR10) chr2:-:13847197..13850811
Molecular Weight (calculated) 64613.80 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.02
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVLQIHQFN GFVSSVSRAQ TNQGRRRAST TVCVQTQLAP SLTQKIMESI SVGGEAGGAG GAYSYNALKR LDNIWSNICT QPTGPQETQQ IVSRVSGFSQ
101: DYSMGNNLVG TFDIVVCGGT LGIFLATALC AKGLRVAVVE RNAIKGRDQE WNISRKEMKE LTEVRVLTED EIEEVIAAKF NPNRCGFENL GDIWVEDILN
201: LGVSPAKLVE TVKQRFISLG GVILEDSSLS SIVIYNDLAV MQLSKGDTLS SRLVIDAMGN FSPILKQIKR GRKPDGMCLV VGSCAHGFKE NSSSDVIYSS
301: SSVTRVADSN VQLFWEAFPA GSGPLDRTTY MFTYTEPQST SPSLEDLLEE YWKLMPKYQG VSLDELEILR VVYGIFPTYR NSPLPAAFDR VLQFGDASGI
401: QSPVSFGGFG SLTRHLGRLS NGIYDAIDGD LLDSDSLSKL NPYMPNLSAS WLFQRAMSAK QQLDVSRGFT NELLHVNFSC MQRLGDPVLR PFLQDIIQFG
501: PLAKTLGLVM LTKPQIIPSI FRQVGIPVLL DWSVHFFMLG LYTLLSAYID PLLRPSLEGL PSKTRFEWKR CLEAWKYGAG LDYEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)