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AT1G06690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27895226 (2016): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT5G53580.1); Has 30017 Blast hits to 30001 proteins in 2563 species: Archae - 570; Bacteria - 19734; Metazoa - 1881; Fungi - 2197; Plants - 1331; Viruses - 0; Other Eukaryotes - 4304 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06690-MONOMEREC:1.-.-.-eggNOG:COG0667eggNOG:KOG1575
EMBL:AC007592EMBL:AY050325EMBL:BT001002EMBL:CP002684
EnsemblPlants:AT1G06690EnsemblPlants:AT1G06690.1entrez:837179Gene3D:3.20.20.100
GeneID:837179Genevisible:Q94A68GO:GO:0009507GO:GO:0009535
GO:GO:0009941GO:GO:0010287GO:GO:0016491Gramene:AT1G06690.1
hmmpanther:PTHR11732hmmpanther:PTHR11732:SF213HOGENOM:HOG000250278InParanoid:Q94A68
InterPro:IPR001395InterPro:IPR018170InterPro:IPR020471InterPro:IPR023210
iPTMnet:Q94A68KEGG:ath:AT1G06690OMA:NEFQWDDPANTHER:PTHR11732
PaxDb:Q94A68Pfam:PF00248Pfam:Q94A68PhylomeDB:Q94A68
PRIDE:Q94A68PRINTS:PR00069PRO:PR:Q94A68PROSITE:PS00062
PROSITE:PS00211ProteinModelPortal:Q94A68Proteomes:UP000006548RefSeq:NP_563770.1
scanprosite:PS00062SMR:Q94A68STRING:3702.AT1G06690.1SUPFAM:SSF51430
TAIR:AT1G06690UniGene:At.26590UniProt:Q94A68
Coordinates (TAIR10) chr1:-:2049742..2052039
Molecular Weight (calculated) 41499.30 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.28
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMATHFTFP FNYVVSEGSH GRRSFVRKLV RAVASGDSVA PAISEESKVK LGGSDLKVTK LGIGVWSWGD NSYWNDFQWD DRKLKAAKGA FDTSLDNGID
101: FFDTAEVYGS KFSLGAISSE TLLGRFIRER KERYPGAEVS VATKFAALPW RFGRESVVTA LKDSLSRLEL SSVDLYQLHW PGLWGNEGYL DGLGDAVEQG
201: LVKAVGVSNY SEKRLRDAYE RLKKRGIPLA SNQVNYSLIY RAPEQTGVKA ACDELGVTLI AYSPIAQGAL TGKYTPENPP SGPRGRIYTR EFLTKLQPLL
301: NRIKQIGENY SKTPTQIALN WLVAQGNVIP IPGAKNAEQA KEFAGAIGWS LTDNEVSELR SLASEIKPVV GFPVEYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)