suba logo
AT1G57770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1); Has 6263 Blast hits to 6155 proteins in 967 species: Archae - 159; Bacteria - 2901; Metazoa - 394; Fungi - 76; Plants - 350; Viruses - 0; Other Eukaryotes - 2383 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G57770-MONOMEReggNOG:COG1233eggNOG:ENOG410JSJGeggNOG:KOG4254
EMBL:AC079732EMBL:AY065278EMBL:AY133831EMBL:CP002684
EnsemblPlants:AT1G57770EnsemblPlants:AT1G57770.1entrez:842152Gene3D:3.50.50.60
GeneID:842152GO:GO:0009507GO:GO:0016491Gramene:AT1G57770.1
hmmpanther:PTHR10668hmmpanther:PTHR10668:SF4InterPro:IPR002937InterPro:IPR023753
KEGG:ath:AT1G57770OMA:TPANEPWPfam:PF01593PhylomeDB:Q9FVR9
PIR:A96612Proteomes:UP000006548RefSeq:NP_176088.2SMR:Q9FVR9
STRING:3702.AT1G57770.1SUPFAM:SSF51905TAIR:AT1G57770UniGene:At.28533
UniProt:Q9FVR9
Coordinates (TAIR10) chr1:+:21395254..21398135
Molecular Weight (calculated) 61727.30 Da
IEP (calculated) 6.97
GRAVY (calculated) 0.01
Length 574 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANFCGLTL QSPFLYNFSR PTIRSSSFIR SSSSSSASSN GNLKEPFSGE PEADVVVIGS GIGGLCCGAL LARYDQDVIV LESHDHPGGA AHSFEIKGYK
101: FDSGPSLFSG LQSRGPQANP LAQVLDALGE SFPCKKYDSW MVYLPEGDFL SRIGPTDFFK DLEKYAGPSA VQEWEKLLGA ILPLSSAAMA LPPLSIRGDL
201: GVLSTAAARY APSLLKSFIK MGPKGALGAT KLLRPFSEIV DSLELKDPFI RNWIDLLAFL LAGVKSDGIL SAEMIYMFAE WYKPGCTLEY PIDGTGAVVE
301: ALVRGLEKFG GRLSLKSHVE NIVIENGKAV GVKLRNGQFV RARKAVVSNA SMWDTLKLLP PGALPESYVK GVNTTPQCES FMHLHLGFDA EGIADDLEIH
401: HIVVNDWDRG VDADQNVVLI SVPSVLSPNL APPGKHVLHA YCPGTEPFGL WEGLDRRSAE YKNLKSQRSE VMWRAVERAL GLGFKREKCE VSLVGTPLTH
501: QRFLRRNRGT YGPAIEAGKG TFPGHSTPIP QLLCCGDSTF PGIGVPAVAA SGAIVANSLV PVSKHSQLLD AIGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)