suba logo
AT4G23210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Predictors External Curations
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 13
Curator
Summary (TAIR10)
Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.
Computational
Description (TAIR10)
cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (CRK13); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, response to molecule of bacterial origin, plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 22 (TAIR:AT4G23300.1); Has 114660 Blast hits to 113447 proteins in 4374 species: Archae - 92; Bacteria - 13215; Metazoa - 42360; Fungi - 9577; Plants - 32731; Viruses - 419; Other Eukaryotes - 16266 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0515eggNOG:ENOG410JV73EMBL:X86953EnsemblPlants:AT4G23210
EnsemblPlants:AT4G23210.1entrez:828420ExpressionAtlas:Q38995GO:GO:0004672
GO:GO:0005524hmmpanther:PTHR27002HOGENOM:HOG000116550InterPro:IPR000719
InterPro:IPR011009PaxDb:Q38995Pfam:PF00069Pfam:PF01657
Pfscan:PS50011Pfscan:PS51473PIR:S66321PROSITE:PS50011
ProteinModelPortal:Q38995scanprosite:PS00107scanprosite:PS00108STRING:3702.AT4G23210.3
SUPFAM:SSF56112tair10-symbols:CRK13TMHMM:TMhelixUniProt:Q38995
Coordinates (TAIR10) chr4:-:12149154..12151418
Molecular Weight (calculated) 68205.00 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.18
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQRSLLSIL CFILLASGVA SVSAQTCIEN RKYFTPNGTY DSNRRLILSS LPNNTASRDG FYYGSIGEEQ DRVYALGMCI PKSTPSDCSN CIKGAAGWLI
101: QDCVNQTDAY YWALDPTLCL VRYSNISFSG SAAFWEIEPQ YLVLNTATIA SNLTEFKTIW EDLTSRTITA ASAARSTPSS SDNHYRVDFA NLTKFQNIYA
201: LMQCTPDISS DECNNCLQRG VLEYQSCCGN NTGGYVMRPI CFFRWQLFTF SKAFHNITLA TTPPLSPPPL QRPVVASQPP SADNRDKKRD NSSGKISMKT
301: ILAIVVVGIV ILIIISGILA RRFARKEKPY QEVELNQTGI TSVRSLQYKF KTIETATNNF SERLGHGGSG HVFKGRLPDG KEIAVKRLSE KTEQSKKEFK
401: NEVVLVAKLQ HRNLVRLLGF SVKGEEKIIV YEYLPNRSLD YILFDPTKQG ELDWKKRYKI IGGTARGILY LHQDSQPTII HRDLKAGNIL LDAHMNPKVA
501: DFGTARIFGM DQSVAITANA AGTPGYMAPE YMELGEFSMK SDVYSYGVLV LEIICGKRNT SFSSPVQNFV TYVSTIIVSH CCCNCKIWIR SLNFVSGLEV
601: MEKRDTIKPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)