suba logo
AT1G17145.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G78420.2); Has 249 Blast hits to 247 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 148; Plants - 77; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111M8NeggNOG:KOG2789EMBL:AY054649EMBL:AY088425
EMBL:BT000039EMBL:CP002684EnsemblPlants:AT1G17145EnsemblPlants:AT1G17145.1
entrez:838285Gene3D:3.30.40.10GeneID:838285GO:GO:0008270
Gramene:AT1G17145.1hmmpanther:PTHR31315hmmpanther:PTHR31315:SF2HOGENOM:HOG000254796
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G17145OMA:FDLEDIM
Pfscan:PS50089PhylomeDB:Q940G8PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_564016.1SMR:Q940G8STRING:3702.AT1G17145.1SUPFAM:SSF57850
TAIR:AT1G17145UniGene:At.18948UniProt:Q940G8
Coordinates (TAIR10) chr1:-:5860351..5862241
Molecular Weight (calculated) 37697.70 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.85
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)