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AT1G33960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.710
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2
Computational
Description (TAIR10)
AVRRPT2-INDUCED GENE 1 (AIG1); FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: Avirulence induced gene (AIG1) family protein (TAIR:AT1G33950.1); Has 4495 Blast hits to 3349 proteins in 353 species: Archae - 20; Bacteria - 338; Metazoa - 1675; Fungi - 168; Plants - 255; Viruses - 14; Other Eukaryotes - 2025 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IM0GeggNOG:ENOG4111GYZEMBL:AK176629EnsemblPlants:AT1G33960
EnsemblPlants:AT1G33960.1entrez:840293ExpressionAtlas:Q67Y39Gene3D:3.40.50.300
GeneID:840293GO:GO:0005525Gramene:AT1G33960.1hmmpanther:PTHR10903
hmmpanther:PTHR10903:SF65InterPro:IPR006703InterPro:IPR027417KEGG:ath:AT1G33960
ncoils:CoilOMA:THKEITHPaxDb:Q67Y39Pfam:P54120
Pfam:PF04548Pfscan:PS51720PhylomeDB:Q67Y39PRIDE:Q67Y39
PROSITE:PS51720ProteinModelPortal:Q67Y39Proteomes:UP000006548RefSeq:NP_174658.1
SMR:Q67Y39STRING:3702.AT1G33960.1SUPFAM:SSF52540TAIR:AT1G33960
tair10-symbols:AIG1UniGene:At.10803UniProt:P54120UniProt:Q67Y39
Coordinates (TAIR10) chr1:+:12346555..12348184
Molecular Weight (calculated) 40072.50 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.53
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDQKNSES FPAKEDHKKD DAAAPAEVDH KDEFSASQPH PVENIVLVGR TGNGKSATGN SIVRSKVFKS KTKSSGVTME CHAVKAVTPE GPILNVIDTP
101: GLFDLSVSAE FIGKEIVKCL TLADGGLHAV LLVLSVRTRI SQEEEMVLST LQVLFGSKIV DYLIVVFTGG DVLEDDGMTL EDYLGDNMPD FLKRVLILCG
201: QRMILFDNKT KDDEKKTKQV HELLKLIDLV RKQNNNIPYT DEMYHMIKEE NERHKKEQEE LESKGHSEEQ LAALMKELQI MNERNLKAMA EMMEKNMKIA
301: MEAQEKLFEQ REKAQEMSYQ QKMEMQEKLK QMEGRMRAEM EAQMLSRQQC SIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)