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AT2G27970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CDK-subunit 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CDK-subunit 2 (CKS2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity; INVOLVED IN: cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase-subunit 1 (TAIR:AT2G27960.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
BioGrid:2691eggNOG:ENOG4111UANeggNOG:KOG3484EMBL:AC006929
EMBL:BT010784EMBL:BT011257EMBL:CP002685EnsemblPlants:AT2G27970
EnsemblPlants:AT2G27970.1entrez:817341Gene3D:3.30.170.10GeneID:817341
Genevisible:Q9SJJ5GO:GO:0005634GO:GO:0005737GO:GO:0007049
GO:GO:0016538GO:GO:0051301Gramene:AT2G27970.1hmmpanther:PTHR23415
HOGENOM:HOG000157009InParanoid:Q9SJJ5IntAct:Q9SJJ5InterPro:IPR000789
KEGG:ath:AT2G27970KO:K02219OMA:IPKNRLMPaxDb:Q9SJJ5
Pfam:PF01111Pfam:Q9SJJ5PhylomeDB:Q9SJJ5PIR:B84679
PRIDE:Q9SJJ5PRINTS:PR00296PRO:PR:Q9SJJ5PROSITE:PS00944
ProteinModelPortal:Q9SJJ5Proteomes:UP000006548RefSeq:NP_180364.1scanprosite:PS00944
SMART:SM01084SMR:Q9SJJ5STRING:3702.AT2G27970.1SUPFAM:SSF55637
TAIR:AT2G27970tair10-symbols:CKS2UniGene:At.38692UniProt:Q9SJJ5
Coordinates (TAIR10) chr2:-:11912460..11913112
Molecular Weight (calculated) 9987.96 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.73
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)