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AT1G49620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclin-dependent kinase inhibitor family protein
Curator
Summary (TAIR10)
Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.
Computational
Description (TAIR10)
ICK5; FUNCTIONS IN: cyclin binding, cyclin-dependent protein kinase inhibitor activity; INVOLVED IN: negative regulation of cyclin-dependent protein kinase activity; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: KIP-related protein 6 (TAIR:AT3G19150.1); Has 254 Blast hits to 244 proteins in 41 species: Archae - 0; Bacteria - 7; Metazoa - 4; Fungi - 18; Plants - 204; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioGrid:26611DIP:DIP-40167NeggNOG:ENOG410J46PeggNOG:ENOG410Y3ZZ
EMBL:AC011807EMBL:AJ301558EMBL:CP002684EnsemblPlants:AT1G49620
EnsemblPlants:AT1G49620.1entrez:841386GeneID:841386Genevisible:Q94CL9
GO:GO:0001673GO:GO:0004861GO:GO:0005654GO:GO:0007050
GO:GO:0045736Gramene:AT1G49620.1hmmpanther:PTHR10265hmmpanther:PTHR10265:SF22
HOGENOM:HOG000294228InParanoid:Q94CL9IntAct:Q94CL9InterPro:IPR003175
InterPro:IPR016701KEGG:ath:AT1G49620OMA:YDIVNDTPANTHER:PTHR10265
PaxDb:Q94CL9Pfam:PF02234Pfam:Q94CL9PhylomeDB:Q94CL9
PIR:H96532PIRSF:PIRSF017811PRIDE:Q94CL9PRO:PR:Q94CL9
ProteinModelPortal:Q94CL9Proteomes:UP000006548RefSeq:NP_175385.1SMR:Q94CL9
STRING:3702.AT1G49620.1TAIR:AT1G49620tair10-symbols:ICK5tair10-symbols:ICN6
tair10-symbols:KRP7UniGene:At.10456UniProt:Q94CL9
Coordinates (TAIR10) chr1:-:18365692..18366559
Molecular Weight (calculated) 21965.90 Da
IEP (calculated) 4.38
GRAVY (calculated) -1.00
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MSETKPKRDS EYEGSNIKRM RLDDDDDVLR SPTRTLSSSS SSSLAYSVSD SGGFCSVALS EEEDDHLSSS ISSGCSSSET NEIATRLPFS DLEAHEISET
101: EISTLLTNNF RKQGISSSEN LGETAEMDSA TTEMRDQRKT EKKKKMEKSP TQAELDDFFS AAERYEQKRF TEKYNYDIVN DTPLEGRYQW VSLKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)