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AT1G65620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lateral organ boundaries (LOB) domain family protein
Curator
Summary (TAIR10)
required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.
Computational
Description (TAIR10)
ASYMMETRIC LEAVES 2 (AS2); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 984 Blast hits to 979 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 984; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28094eggNOG:ENOG410IVXFeggNOG:ENOG4111S1UEMBL:AB080802
EMBL:AB473833EMBL:AC001229EMBL:AF447887EMBL:AY519483
EMBL:BT025163EMBL:CP002684EnsemblPlants:AT1G65620EnsemblPlants:AT1G65620.1
EnsemblPlants:AT1G65620.2EnsemblPlants:AT1G65620.3EnsemblPlants:AT1G65620.4entrez:842873
GeneID:842873Genevisible:O04479GO:GO:0005634GO:GO:0005654
GO:GO:0009799GO:GO:0009943GO:GO:0009944GO:GO:0009954
GO:GO:0048441Gramene:AT1G65620.1Gramene:AT1G65620.2Gramene:AT1G65620.3
Gramene:AT1G65620.4hmmpanther:PTHR31301hmmpanther:PTHR31301:SF26HOGENOM:HOG000237548
InParanoid:O04479IntAct:O04479InterPro:IPR004883KEGG:ath:AT1G65620
ncoils:CoilOMA:YHHHQFFPaxDb:O04479Pfam:O04479
Pfam:PF03195Pfscan:PS50891PhylomeDB:O04479PIR:C96681
PRO:PR:O04479PROSITE:PS50891Proteomes:UP000006548RefSeq:NP_001077777.1
RefSeq:NP_001077778.1RefSeq:NP_001117553.1RefSeq:NP_176739.1STRING:3702.AT1G65620.1
TAIR:AT1G65620tair10-symbols:AS2UniGene:At.27203UniProt:O04479
Coordinates (TAIR10) chr1:+:24400146..24400745
Molecular Weight (calculated) 21710.70 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.32
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)