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AT3G54650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: generative cell mitosis, seed development, embryo development, ubiquitin-dependent protein catabolic process, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); Has 1738 Blast hits to 1195 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 733; Fungi - 89; Plants - 663; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
BioGrid:9946DIP:DIP-46993NeggNOG:ENOG410IVI0eggNOG:ENOG410YEIX
EMBL:AF462827EMBL:AL138650EMBL:AY142006EMBL:CP002686
EnsemblPlants:AT3G54650EnsemblPlants:AT3G54650.1entrez:824630Gene3D:3.80.10.10
GeneID:824630Genevisible:Q8W104GO:GO:0001673GO:GO:0009555
GO:GO:0009793GO:GO:0016567GO:GO:0019005GO:GO:0031146
GO:GO:0048316GO:GO:0055047Gramene:AT3G54650.1hmmpanther:PTHR24006
HOGENOM:HOG000244167InParanoid:Q8W104IntAct:Q8W104InterPro:IPR001810
InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT3G54650OMA:FSCPSLG
PaxDb:Q8W104Pfam:PF00646Pfam:Q8W104PhylomeDB:Q8W104
PIR:T47624PRIDE:Q8W104PRO:PR:Q8W104ProteinModelPortal:Q8W104
Proteomes:UP000006548RefSeq:NP_567005.2SMART:SM00367SMR:Q8W104
STRING:3702.AT3G54650.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G54650
tair10-symbols:FBL17UniGene:At.1208UniPathway:UPA00143UniProt:Q8W104
Coordinates (TAIR10) chr3:-:20226004..20228882
Molecular Weight (calculated) 64772.30 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.09
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)