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AT3G21860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SKP1-like 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 10 (SK10); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 9 (TAIR:AT3G21850.1); Has 1416 Blast hits to 1412 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 179; Plants - 530; Viruses - 11; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
BioGrid:7072eggNOG:COG5201eggNOG:KOG1724EMBL:AB025634
EMBL:CP002686EMBL:DQ056602EnsemblPlants:AT3G21860EnsemblPlants:AT3G21860.1
entrez:821740GeneID:821740Genevisible:Q9LSX8GO:GO:0005634
GO:GO:0006511GO:GO:0016567GO:GO:0019005Gramene:AT3G21860.1
hmmpanther:PTHR11165HOGENOM:HOG000172184IntAct:Q9LSX8InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
KEGG:ath:AT3G21860KO:K03094OMA:ENDYTHEPaxDb:Q9LSX8
Pfam:PF01466Pfam:PF03931Pfam:Q9LSX8PhylomeDB:Q9LSX8
PIRSF:PIRSF028729PRIDE:Q9LSX8PRO:PR:Q9LSX8ProteinModelPortal:Q9LSX8
Proteomes:UP000006548RefSeq:NP_566695.1SMART:SM00512SMR:Q9LSX8
STRING:3702.AT3G21860.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G21860
tair10-symbols:ASK10tair10-symbols:SK10UniGene:At.70381UniPathway:UPA00143
UniProt:Q9LSX8
Coordinates (TAIR10) chr3:-:7699777..7700235
Molecular Weight (calculated) 17573.50 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.61
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTKKIILKS SDGHSFEVEE EAACQCQTIA HMSEDDCTDN GIPLPEVTGK ILEMVIEYCN KHHVDAANPC SDEDLKKWDK EFMEKYQSTI FDLIMAANYL
101: NIKSLLDLAC QTVADMIKDN TVEHTRKFFN IENDYTHEEE EAVRRENQWG FE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)