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AT4G00350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.487
vacuole 0.449
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AF013293EMBL:AF195115
EMBL:AL161471EMBL:BT004194EMBL:BX826625EMBL:CP002687
EnsemblPlants:AT4G00350EnsemblPlants:AT4G00350.1entrez:827306GeneID:827306
Genevisible:F4JH46GO:GO:0015238GO:GO:0015297GO:GO:0016021
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF109InParanoid:F4JH46InterPro:IPR002528
KEGG:ath:AT4G00350KO:K03327OMA:IAYMLAVPaxDb:F4JH46
Pfam:PF01554PIR:T01536PRIDE:F4JH46ProteinModelPortal:F4JH46
Proteomes:UP000006548RefSeq:NP_567173.3SMR:F4JH46STRING:3702.AT4G00350.1
TAIR:AT4G00350TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.34572UniProt:F4JH46
Coordinates (TAIR10) chr4:+:151978..153988
Molecular Weight (calculated) 59048.60 Da
IEP (calculated) 4.66
GRAVY (calculated) 0.65
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIPVREERR SSSSSAGPLQ QTISLAADDA IDSGPSSPLV VKVSVFETEH ETTKLIHAPS TLLGETTGDA DFPPIQSFRD AKLVCVVETS KLWEIAAPIA
101: FNILCNYGVN SFTSIFVGHI GDLELSAVAI ALSVVSNFSF GFLLGMASAL ETLCGQAFGA GQMDMLGVYM QRSWLILLGT SVCLLPLYIY ATPLLILLGQ
201: EPEIAEISGK FTTQIIPQMF ALAINFPTQK FLQSQSKVGI MAWIGFFALT LHIFILYLFI NVFKWGLNGA AAAFDVSAWG IAIAQVVYVV GWCKDGWKGL
301: SWLAFQDVWP FLKLSFASAV MLCLEIWYFM TIIVLTGHLE DPVIAVGSLS ICMNINGWEG MLFIGINAAI SVRVSNELGS GHPRAAKYSV IVTVIESLVI
401: GVVCAIVILI TRDDFAVIFT ESEEMRKAVA DLAYLLGITM ILNSLQPVIS GVAVGGGWQA PVAYINLFCY YAFGLPLGFL LGYKTSLGVQ GIWIGMICGT
501: SLQTLILLYM IYITNWNKEV EQASERMKQW GAGYEKLEKI AT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)