AT1G55570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 12 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 12 (sks12); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 11 (TAIR:AT3G13390.1); Has 5441 Blast hits to 5412 proteins in 1035 species: Archae - 18; Bacteria - 1816; Metazoa - 269; Fungi - 1918; Plants - 1254; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20757882..20759771 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62216.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 555 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGGVKLLAV CLCVATATVM MVQAEDPYFH HVWNVTYGTA SPLGVPQQVI LINGQFPGPN INSTSNNNVI VNVFNNLDEP FLITWAGIQH RKNCWQDGTA 101: GTMCPIPPGQ NFTYHFQPKD QIGSYFYYPT TAMHRAAGGF GGLRVNSRLL IPVPYADPED DYTILINDWY TKSHTQLKKF LDSGRTIGRP DGILINGKSG 201: KTDGSDKPLF TLKPGKTYRV RICNVGLKAS LNFRIQNHKM KLVEMEGSHV LQNDYDSLDV HVGQCFGVIV TADQEPKDYY MIASTRFLKK PLTTTGLLRY 301: EGGKGPASSQ LPAAPVGWAW SLNQYRSFRW NLTASAARPN PQGSYHYGKI NITRTIKLVN TQGKVDGKLR YALSGVSHTD PETPLKLAEY FGVADKVFKY 401: DTISDNPNPD QIKNIKIEPN VLNITHRTFI EVVFENHERS VQSWHLDGYS FFAVAVEPGT WTPEKRKNYN LLDAVSRHTV QVYPKCWAAI LLTFDNCGMW 501: NIRSENAERR YLGQQLYASV LSPEKSLRDE YNMPETSLQC GLVKGKPKVN PYAGA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)