AT4G38190.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cellulose synthase like D4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:17910096..17913641 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 124602.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1111 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MASTPPQTSK KVRNNSGSGQ TVKFARRTSS GRYVSLSRDN IELSGELSGD YSNYTVHIPP TPDNQPMATK AEEQYVSNSL FTGGFNSVTR AHLMDKVIDS 0101: DVTHPQMAGA KGSSCAMPAC DGNVMKDERG KDVMPCECRF KICRDCFMDA QKETGLCPGC KEQYKIGDLD DDTPDYSSGA LPLPAPGKDQ RGNNNNMSMM 0201: KRNQNGEFDH NRWLFETQGT YGYGNAYWPQ DEMYGDDMDE GMRGGMVETA DKPWRPLSRR IPIPAAIISP YRLLIVIRFV VLCFFLTWRI RNPNEDAIWL 0301: WLMSIICELW FGFSWILDQI PKLCPINRST DLEVLRDKFD MPSPSNPTGR SDLPGIDLFV STADPEKEPP LVTANTILSI LAVDYPVEKV SCYLSDDGGA 0401: LLSFEAMAEA ASFADLWVPF CRKHNIEPRN PDSYFSLKID PTKNKSRIDF VKDRRKIKRE YDEFKVRING LPDSIRRRSD AFNAREEMKA LKQMRESGGD 0501: PTEPVKVPKA TWMADGTHWP GTWAASTREH SKGDHAGILQ VMLKPPSSDP LIGNSDDKVI DFSDTDTRLP MFVYVSREKR PGYDHNKKAG AMNALVRASA 0601: ILSNGPFILN LDCDHYIYNC KAVREGMCFM MDRGGEDICY IQFPQRFEGI DPSDRYANNN TVFFDGNMRA LDGVQGPVYV GTGTMFRRFA LYGFDPPNPD 0701: KLLEKKESET EALTTSDFDP DLDVTQLPKR FGNSTLLAES IPIAEFQGRP LADHPAVKYG RPPGALRVPR DPLDATTVAE SVSVISCWYE DKTEWGDRVG 0801: WIYGSVTEDV VTGYRMHNRG WRSVYCITKR DSFRGSAPIN LTDRLHQVLR WATGSVEIFF SRNNAILASK RLKFLQRLAY LNVGIYPFTS LFLILYCFLP 0901: AFSLFSGQFI VRTLSISFLV YLLMITICLI GLAVLEVKWS GIGLEEWWRN EQWWLISGTS SHLYAVVQGV LKVIAGIEIS FTLTTKSGGD DNEDIYADLY 1001: IVKWSSLMIP PIVIAMVNII AIVVAFIRTI YQAVPQWSKL IGGAFFSFWV LAHLYPFAKG LMGRRGKTPT IVFVWAGLIA ITISLLWTAI NPNTGPAAAA 1101: EGVGGGGFQF P |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)