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AT4G38190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose synthase like D4
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase
Computational
Description (TAIR10)
cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38190-MONOMERCAZy:GT2EC:2.4.1.-eggNOG:COG1215
eggNOG:ENOG410IIIQEMBL:AL035538EMBL:AL161593EMBL:BT005743
EMBL:CP002687EnsemblPlants:AT4G38190EnsemblPlants:AT4G38190.1entrez:829975
ExpressionAtlas:Q9SZL9Gene3D:3.30.40.10GeneID:829975Genevisible:Q9SZL9
GO:GO:0000139GO:GO:0005794GO:GO:0009846GO:GO:0016021
GO:GO:0016760GO:GO:0030244GO:GO:0071555Gramene:AT4G38190.1
gramene_pathway:2.4.1.12gramene_pathway:PWY-1001gramene_plant_reactome:1119314gramene_plant_reactome:6875373
hmmpanther:PTHR13301hmmpanther:PTHR13301:SF40HOGENOM:HOG000241941InParanoid:Q9SZL9
InterPro:IPR005150InterPro:IPR013083InterPro:IPR029044iPTMnet:Q9SZL9
KEGG:ath:AT4G38190OMA:KGSRCAMPaxDb:Q9SZL9Pfam:PF03552
Pfam:PF14570Pfam:Q9SZL9PhylomeDB:Q9SZL9PIR:T05646
PRIDE:Q9SZL9PRO:PR:Q9SZL9ProteinModelPortal:Q9SZL9Proteomes:UP000006548
RefSeq:NP_195532.1SMR:Q9SZL9STRING:3702.AT4G38190.1SUPFAM:SSF53448
SUPFAM:SSF57850TAIR:AT4G38190tair10-symbols:ATCSLD4tair10-symbols:CSLD4
TMHMM:TMhelixUniGene:At.31193UniProt:Q9SZL9UniProt:W8PV30
Coordinates (TAIR10) chr4:-:17910096..17913641
Molecular Weight (calculated) 124602.00 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.23
Length 1111 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASTPPQTSK KVRNNSGSGQ TVKFARRTSS GRYVSLSRDN IELSGELSGD YSNYTVHIPP TPDNQPMATK AEEQYVSNSL FTGGFNSVTR AHLMDKVIDS
0101: DVTHPQMAGA KGSSCAMPAC DGNVMKDERG KDVMPCECRF KICRDCFMDA QKETGLCPGC KEQYKIGDLD DDTPDYSSGA LPLPAPGKDQ RGNNNNMSMM
0201: KRNQNGEFDH NRWLFETQGT YGYGNAYWPQ DEMYGDDMDE GMRGGMVETA DKPWRPLSRR IPIPAAIISP YRLLIVIRFV VLCFFLTWRI RNPNEDAIWL
0301: WLMSIICELW FGFSWILDQI PKLCPINRST DLEVLRDKFD MPSPSNPTGR SDLPGIDLFV STADPEKEPP LVTANTILSI LAVDYPVEKV SCYLSDDGGA
0401: LLSFEAMAEA ASFADLWVPF CRKHNIEPRN PDSYFSLKID PTKNKSRIDF VKDRRKIKRE YDEFKVRING LPDSIRRRSD AFNAREEMKA LKQMRESGGD
0501: PTEPVKVPKA TWMADGTHWP GTWAASTREH SKGDHAGILQ VMLKPPSSDP LIGNSDDKVI DFSDTDTRLP MFVYVSREKR PGYDHNKKAG AMNALVRASA
0601: ILSNGPFILN LDCDHYIYNC KAVREGMCFM MDRGGEDICY IQFPQRFEGI DPSDRYANNN TVFFDGNMRA LDGVQGPVYV GTGTMFRRFA LYGFDPPNPD
0701: KLLEKKESET EALTTSDFDP DLDVTQLPKR FGNSTLLAES IPIAEFQGRP LADHPAVKYG RPPGALRVPR DPLDATTVAE SVSVISCWYE DKTEWGDRVG
0801: WIYGSVTEDV VTGYRMHNRG WRSVYCITKR DSFRGSAPIN LTDRLHQVLR WATGSVEIFF SRNNAILASK RLKFLQRLAY LNVGIYPFTS LFLILYCFLP
0901: AFSLFSGQFI VRTLSISFLV YLLMITICLI GLAVLEVKWS GIGLEEWWRN EQWWLISGTS SHLYAVVQGV LKVIAGIEIS FTLTTKSGGD DNEDIYADLY
1001: IVKWSSLMIP PIVIAMVNII AIVVAFIRTI YQAVPQWSKL IGGAFFSFWV LAHLYPFAKG LMGRRGKTPT IVFVWAGLIA ITISLLWTAI NPNTGPAAAA
1101: EGVGGGGFQF P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)